PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2952s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 294aa MW: 33810.6 Da PI: 10.3403

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2952s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.4	1.7e-20	19	111	1	96
EEEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvl.tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 ffkvl + dv+++++ lp +f++++ k e s ++++++++grsWev + +k+++ y+ ++GW +Fv++n L ++f++F+++g++ Araha.2952s0002.1.p 19 FFKVLqSVVDVSSENLRALPHDFVRSFTDK-ELSGKMKIRTQWGRSWEVGI--SKNPRFyYMEKSGWDRFVRDNSLGNNEFITFTHKGNM 105 56666244688999999*****999655.6778************..**566669*********************99 PP EE..EEEE CS B3 89 efelvvkv 96 f+l+ + Araha.2952s0002.1.p 106 HFTLN--I 111 99554..3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.9E-19	14	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.89E-19	15	121	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.58E-18	18	113	No hit	No description
SMART	SM01019	7.3E-20	19	115	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-18	19	111	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.662	20	115	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-11	198	290	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.86E-13	199	290	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.3E-14	205	293	IPR003340	B3 DNA binding domain
CDD	cd10017	3.12E-8	212	289	No hit	No description
PROSITE profile	PS50863	8.177	246	293	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MATNPDFLRC KEERNNERFF KVLQSVVDVS SENLRALPHD FVRSFTDKEL SGKMKIRTQW 60 GRSWEVGISK NPRFYYMEKS GWDRFVRDNS LGNNEFITFT HKGNMHFTLN IFKLDGKEMM 120 QPPQSRALLA SSSRFKTEQG EDDKKEEVVS ELSNRGRTPA AESNGRKLNL RKKAAEESQE 180 SKKTEKVVRA RRDYAGASSS TATEFTSLIK QGYLKFLRLR TSVAKDHMPD EKTMFKIHHP 240 NGKKCWDVVF LGRFGVFSGG WSRLVKEYPL VVGDTCKFTF IKPEELLLVV SKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2952s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013394	3e-89	AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBank	CP002688	3e-89	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002863383.1	0.0	B3 domain-containing protein At2g16210
Swissprot	Q5BPT7	1e-156	Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBL	D7MQM8	0.0	D7MQM8_ARALL; Uncharacterized protein
STRING	fgenesh1_pm.C_scaffold_8000081	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16210.1	1e-149	B3 family protein

Link Out ? help Back to Top
Phytozome	Araha.2952s0002.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]