PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.29023s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 294aa    MW: 33677.5 Da    PI: 8.67
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.29023s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.86.4e-212099996
                          HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                            +ks+ + +p kf+++h +  k+e+kt++l++ +s r+W+vk+  ++++    lt+GWk+Fv+a++L+ gDfvvFk++g++ f  +v++
  Araha.29023s0004.1.p 20 PGFKSH-IKIPVKFFSKHiK-GKHEGKTVILRSnSSKRTWKVKM--EGRR----LTNGWKDFVEAHDLRIGDFVVFKHKGDMLF--HVTA 99
                          567777.99*********64.456889*****95666*******..8888....***********************9998888..6665 PP
2B358.99e-192062901699
                           EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                    B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                            +l++kf+++++++k+++k++tl d+sg++W v+l ++k+  r+vl++G keF +a g+ke ++vvF+l+++ +++ +++k+++k
  Araha.29023s0004.1.p 206 QYLSRKFISSNKMEKAGGKKITLLDKSGEEWPVTLLMDKRYTRMVLGSGLKEFYNAIGVKEYESVVFELVWEeTTTLPMFKFCSK 290
                           6899******************************************************************998888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-267105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-248109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.83111103IPR003340B3 DNA binding domain
CDDcd100172.65E-181298No hitNo description
SMARTSM010192.0E-2514103IPR003340B3 DNA binding domain
PfamPF023622.8E-152395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-8144207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-9145217IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.6E-19151291IPR003340B3 DNA binding domain
PfamPF023625.8E-17205290IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-13206289IPR015300DNA-binding pseudobarrel domain
CDDcd100174.97E-13207288No hitNo description
PROSITE profilePS508639.15208290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-13208288IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDNPSLFSPK NPHFFQPLLP GFKSHIKIPV KFFSKHIKGK HEGKTVILRS NSSKRTWKVK  60
MEGRRLTNGW KDFVEAHDLR IGDFVVFKHK GDMLFHVTAL GSSCCEVQYA PSGTLDEDEE  120
SDEIGESSRK EKEIEENVKT EPDQFSSDLT CFSQYVTTSN LTRDSVCMPR DFAKRYGLNI  180
GRHEIVLMNE EGKSWESEVK SYKSGQYLSR KFISSNKMEK AGGKKITLLD KSGEEWPVTL  240
LMDKRYTRMV LGSGLKEFYN AIGVKEYESV VFELVWEETT TLPMFKFCSK TKT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.29023s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937140.0AB493714.1 Arabidopsis thaliana At4g31640 mRNA for hypothetical protein, partial cds, clone: RAAt4g31640.
GenBankAJ4410740.0AJ441074.1 Arabidopsis thaliana mRNA for putative auxin response factor 22 (arf22 gene).
GenBankAY1425310.0AY142531.1 Arabidopsis thaliana unknown protein (At4g31640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194892.11e-125transcriptional factor B3 family protein
SwissprotQ9SB801e-126REM5_ARATH; B3 domain-containing protein REM5
TrEMBLA0A178V1971e-123A0A178V197_ARATH; Uncharacterized protein
STRINGAT4G31640.11e-124(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-118B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]