PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2788s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 392aa    MW: 43496.6 Da    PI: 8.4557
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2788s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-1656100147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r rWT eE++++v+a k++G   W++I +++g  +t+ q++s+ qk+
  Araha.2788s0005.1.p  56 RERWTDEEHKKFVEALKLYGRA-WRRIEEHVG-SKTAVQIRSHAQKF 100
                          78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-1650105IPR009057Homeodomain-like
PROSITE profilePS5129419.90851105IPR017930Myb domain
TIGRFAMsTIGR015571.3E-1654103IPR006447Myb domain, plants
SMARTSM007178.0E-1355103IPR001005SANT/Myb domain
PfamPF002493.7E-135699IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-95696IPR009057Homeodomain-like
CDDcd001676.54E-1058101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MASSTLTANV QSTKAPPLRN RDEETADKQI QFNDQSFGGN DCAPKVRKPY TITKERERWT  60
DEEHKKFVEA LKLYGRAWRR IEEHVGSKTA VQIRSHAQKF FSKVAREATG GDGSSVEPIV  120
IPPPRPKRKP AHPYPRKFGN EADQTSRPVS PSELDNQSPT SVLSTVGSEA LGSLDSSSPN  180
RSLSPISSAS PPAALTTTAN APEELETLKL ELFPRERLLN RESSIKEPTK QSLKLFGKTV  240
LVSDSGMSSP LTTSTYCKSP IQPLPRKLSS SKTLPIIRNS QEELLSCWIQ VPLKQEYVEN  300
RCLDSGKAVQ NEGSSTGSNT GSVDDTGHTD KTSEPETMVC QWEFKPSERS AFSELRRTNS  360
ESNSRGFGPY KKRKMVTEEE QEQEEEIRLQ L*
Functional Description ? help Back to Top
Source Description
UniProtMorning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2788s0005.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3788600.0AF378860.1 Arabidopsis thaliana AT5g17300/MKP11_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568344.20.0Homeodomain-like superfamily protein
SwissprotF4KGY60.0RVE1_ARATH; Protein REVEILLE 1
TrEMBLD7LWZ30.0D7LWZ3_ARALL; Myb family transcription factor
STRINGAT5G17300.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63562644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.10.0MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Xu G, et al.
    REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis.
    Photosyn. Res., 2015. 126(2-3): p. 331-40
    [PMID:25910753]
  3. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]