PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.27810s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19535.5 Da PI: 5.5941 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 45.2 | 2.7e-14 | 30 | 74 | 57 | 101 |
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 + +l+yeA ar+rdPvyG+vg+i++lq+q+++l+aela+++++l Araha.27810s0008.1.p 30 XVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQL 74 6889*************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.7E-11 | 30 | 71 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MCLRSLLRFG GRDVSFHGGA QGFRXXXXXX VVTLTYEALA RLRDPVYGCV GHIFALQHQV 60 MNLQAELAYV QTQLSTLQGL PPPNPQNNSR TEAASSSNAP LISSVDNKSN VSSSSLHIPC 120 MSSQQQQPKE AIEVSTESVD LSTLFGLEDP VDEDGDLNAL AREFLSKYLT GGKCRPSSPI 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.27810s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473855 | 1e-176 | AB473855.1 Arabidopsis thaliana ASL22 mRNA for ASYMMETRIC LEAVES2-like 22 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879137.1 | 9e-99 | LOB domain-containing protein 31 | ||||
Swissprot | O81322 | 3e-86 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | D7M5R7 | 1e-91 | D7M5R7_ARALL; LOB domain protein 31 | ||||
STRING | fgenesh1_pm.C_scaffold_6002970 | 2e-92 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 8e-75 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Araha.27810s0008.1.p |