PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2771s0010.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 333aa MW: 37207.2 Da PI: 9.1326

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2771s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	83.4	3.2e-26	115	212	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkeps.fskehdq 86 lf r +s+eDe+ +Lq +idf+++tg dafye vkksisf+++++qlv+Kir+L+kKf kkv k k++++++ sk+ dq Araha.2771s0010.1.p 115 LFVRKFSKEDEVFILQSIIDFNTRTGYP----SDAFYEDVKKSISFEATTDQLVTKIRNLRKKFDKKVLKslkkGKTEEQIVyHSKAYDQ 200 6899********************43....589**************************99877665555666655157889 PP DUF573 87 kifelskkiWgs 98 +f+ls+kiWgs Araha.2771s0010.1.p 201 RCFDLSRKIWGS 212 **********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.8E-22	116	211	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAPKQLEKFE SPPMALASEE EESGSTEKGS GSSGEESDSS DEESKPVEVS KKEAHSKKLV 60 VPISVVNQPS GSKTTTKPSH VGTKRVSEKT DEGRKKKMKM SEDDVKNDEK PKQNLFVRKF 120 SKEDEVFILQ SIIDFNTRTG YPSDAFYEDV KKSISFEATT DQLVTKIRNL RKKFDKKVLK 180 SLKKGKTEEQ IVYHSKAYDQ RCFDLSRKIW GSNGILSSKS KTMLQGQQLG GKVKKDDEDE 240 EPGEHVITTP LSSGQELVSF ITVENPTMLG IDEAKWIANW DKVKDGPEKR ELEFILKKLQ 300 AKQAELVMMR IGFINDAAAV LFKQDKASSS GK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2771s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020886030.1	1e-147	probable transcription factor At4g01260
Swissprot	O04608	1e-100	STKLR_ARATH; Probable transcription factor At4g01260
TrEMBL	D7L3N6	1e-149	D7L3N6_ARALL; Predicted protein
STRING	Al_scaffold_0003_3985	1e-150	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19132	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01260.1	1e-85	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Araha.2771s0010.1.p