PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.27238s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 36182.2 Da PI: 6.2617 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164 | 5.5e-51 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF Ptdeel+v+yL++k++g +++l + i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+d Araha.27238s0003.1.p 14 LPPGFRFYPTDEELMVQYLCRKAAGYDFSL-QLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTD 101 79***************************9.89***************8888899*********************************9 PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k + + +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl Araha.27238s0003.1.p 102 KIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 99988.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-66 | 9 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.549 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-25 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MGIQETDPLA QLSLPPGFRF YPTDEELMVQ YLCRKAAGYD FSLQLIAEID LYKFDPWVLP 60 NKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIISTEGQR VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQSSAQKQV YENVITSARE 180 FSNNGTSSTT SSSSHFEDVL DSFQHEIDNR NFQFSNPNRF SSLRPDLTEQ KTGFNGLADT 240 SNFDWGSFAG NVEHNNYSVP ELGLSHVVPN LEYNCSYPKT EEEVESIHGF NNSGELAQKG 300 YGVDSVGFGY SGQVGGFGFM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-124 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-124 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-124 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-124 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-124 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-124 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-124 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-124 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00012 | PBM | Transfer from AT1G52890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.27238s0003.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by jasmonic acid. Not induced by cold treatment. {ECO:0000269|PubMed:12646039, ECO:0000269|PubMed:15319476}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065268 | 0.0 | AY065268.1 Arabidopsis thaliana putative NAM protein (At1g52890) mRNA, complete cds. | |||
GenBank | AY117224 | 0.0 | AY117224.1 Arabidopsis thaliana putative NAM protein (At1g52890) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002894409.1 | 0.0 | NAC domain-containing protein 19 | ||||
Swissprot | Q9C932 | 0.0 | NAC19_ARATH; NAC domain-containing protein 19 | ||||
TrEMBL | D7KJM1 | 0.0 | D7KJM1_ARALL; ANAC019 | ||||
STRING | fgenesh2_kg.1__4367__AT1G52890.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1435 | 27 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 0.0 | NAC domain containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Araha.27238s0003.1.p |