PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2722s0015.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24222.8 Da    PI: 8.8073
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2722s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-215098149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k ie++++rqvtfskRr g++KK  ELSvL++a++avi fs+ g++y +
  Araha.2722s0015.1.p 50 KIIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCGRIYRF 98
                         579*******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.72642102IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-2542101IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-2343117IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-194464IPR002100Transcription factor, MADS-box
PfamPF003193.1E-215298IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-196479IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-1979100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEEERETSTM TCLTPKDPLQ SPNMLISQPK KETTTQTPKT TRGRQKIEIK IIEEETKRQV  60
TFSKRRRGLF KKSAELSVLT GAKIAVITFS KCGRIYRFGH VDALIDKYLR KSPVKLEGYS  120
GDNVADEESR RPWWERPVES VPEEELEEYM AALSMLRENI GKKIVAMGND RTVEMVPAWP  180
INVMGWKPTV DMQSLENLSD GITRCRVGQN GD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-1344981872PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-1344981872PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2722s0015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412400.0AY141240.1 Arabidopsis thaliana MADS-box protein AGL100 mRNA, complete cds.
GenBankBT0252840.0BT025284.1 Arabidopsis thaliana At1g17310 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4462580.0DQ446258.1 Arabidopsis thaliana clone pENTR221-At1g17310 MADS-box protein (At1g17310) mRNA, complete cds.
GenBankT13M220.0AC026479.2 Sequence of BAC T13M22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892945.11e-135agamous-like MADS-box protein AGL61
TrEMBLD7KFE11e-134D7KFE1_ARALL; MADS-box protein
STRINGfgenesh2_kg.1__1889__AT1G17310.11e-135(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.11e-115M-type_MADS family protein