PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2597s0029.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 316aa    MW: 35844.4 Da    PI: 4.8914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2597s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12153196654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  A++Y+k+L
  Araha.2597s0029.1.p 153 LMAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDAIDYMKEL 196
                          589*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.663147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-16150214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10153196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.15E-5154196No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15154213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEMELTRSRK QESNNLDVIN GGFMAVDQFV PNDWNFDYHY FNNLLQEDDN IDHPSSSLMN  60
LISQPPPLLH QPPQPSSPPP YSPPLSSAFD YPFLEDIIDS SLSHPPFILP TSQENNINNY  120
SPSMEESKSF ISIGETNKKK SNKKLEGQPS KNLMAERRRR KRLNDRLSML RSIVPKITKM  180
DRTSILGDAI DYMKELLDKI NKLQEDEQEI RSNSHLNNLI TNDSMVRNSL KFEVDQREVN  240
THIDICCPTK PGLVLSTVST LETLGLEIQQ CVISCFSDFS LQASCLEVSE QRDMVTSEDT  300
KQALIRNAGY GGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137159KKKSNKKLEGQPSKNLMAERRRR
2155162ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2597s0029.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885940.0AF488594.1 Arabidopsis thaliana clone bHLH061 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876742.10.0transcription factor bHLH61
SwissprotQ9LXA90.0BH061_ARATH; Transcription factor bHLH61
TrEMBLA0A178UKE20.0A0A178UKE2_ARATH; Uncharacterized protein
STRINGfgenesh2_kg.6__1024__AT5G10570.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-168bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]