PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.25287s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 236aa    MW: 26743.7 Da    PI: 5.5675
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.25287s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-08180225145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                           + +W+t E +  +++ +++G + Wk+I  + +   +Rt  ++k++++
  Araha.25287s0001.1.p 180 KVPWSTAETLAVLKGYEKYGAN-WKRIKDENPilVRRTNGDIKDKFR 225
                           579*****************99.**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.151175232IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-8176229IPR009057Homeodomain-like
SuperFamilySSF466893.35E-7177228IPR009057Homeodomain-like
SMARTSM007172.0E-4179230IPR001005SANT/Myb domain
PfamPF002491.6E-5180225IPR001005SANT/Myb domain
CDDcd116602.17E-12181229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDESEDIESS EESQETASMV EAREGVVNQN SQASEAMEDE QESLLDTELE RPISGGSKAV  60
YVPRQFKPIS SAVVDRALRE LRASKIELMN ALEKGRPSNL NNEKITEQEN DVANPSATNA  120
SPRPSLMERR STAHTYEWKD SLDDSDGEMG DDGVRKSKRK RIVVSPLKRN RGFEGARRPK  180
VPWSTAETLA VLKGYEKYGA NWKRIKDENP ILVRRTNGDI KDKFRVEMRR EERHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.25287s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195340.0AY519534.1 Arabidopsis thaliana MYB transcription factor (At1g06910) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889623.11e-168uncharacterized protein LOC9328427
TrEMBLD7KG771e-166D7KG77_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10005361e-167(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.11e-129TRF-like 7