PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.25074s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 181aa MW: 20663.6 Da PI: 6.5279 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 122.6 | 2e-38 | 4 | 93 | 3 | 98 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +rlw+eeDei+lLqG+idfka+tg+sp+dd+++f++++kksisf+vsk+q+ +Kir LK+K+ +k+kk +s++++hd+k+f+l+k Araha.25074s0001.1.p 4 LHRLWTEEDEISLLQGMIDFKAETGTSPHDDLNKFFDIAKKSISFDVSKNQFGDKIRGLKNKYFGKRKK------KSVESDHDKKCFGLAK 88 68*******************************************************************......8999************ PP DUF573 94 kiWgs 98 +iWgs Araha.25074s0001.1.p 89 SIWGS 93 ***95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.8E-30 | 5 | 92 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
QTHLHRLWTE EDEISLLQGM IDFKAETGTS PHDDLNKFFD IAKKSISFDV SKNQFGDKIR 60 GLKNKYFGKR KKKSVESDHD KKCFGLAKSI WGSVEEDKEV VILGGDSELS NWFEKSFLVR 120 VVASLGVDEC FVKWKWSKVS EETKKKIEEK IKMVEAKECE LLSQKVDVLQ EVTSVIAETN 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.25074s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY042861 | 1e-171 | AY042861.1 Arabidopsis thaliana Unknown protein (T12C22.8) mRNA, complete cds. | |||
GenBank | AY072504 | 1e-171 | AY072504.1 Arabidopsis thaliana unknown protein (At1g44810; T12C22.8) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-171 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T12C22 | 1e-171 | AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886805.1 | 2e-96 | probable transcription factor At1g44810 | ||||
Swissprot | Q9LPF0 | 2e-96 | STKLB_ARATH; Probable transcription factor At1g44810 | ||||
TrEMBL | A0A178W944 | 5e-94 | A0A178W944_ARATH; Uncharacterized protein | ||||
STRING | AT1G44810.1 | 9e-95 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44810.1 | 3e-82 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Araha.25074s0001.1.p |
Publications ? help Back to Top | |||
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