PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2505s0001.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25459.4 Da    PI: 5.0926
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2505s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.2e-2061114457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          ++++++eq++ Le  Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Araha.2505s0001.2.p  61 KRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 114
                          45899***********************************************95 PP
2HD-ZIP_I/II120.67.8e-3960151293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+ls+eqv++LE sFe ++kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k++E +y+++k+ay++ + e++rL++ev +L+e+l
  Araha.2505s0001.2.p  60 RKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKIKNAYETTVVEKCRLDSEVLHLKEQL 149
                          8***************************************************************************************99 PP

          HD-ZIP_I/II  92 ke 93 
                           e
  Araha.2505s0001.2.p 150 YE 151
                          76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.25E-1853117IPR009057Homeodomain-like
PROSITE profilePS5007116.98955115IPR001356Homeobox domain
SMARTSM003893.0E-2058119IPR001356Homeobox domain
CDDcd000864.84E-1760116No hitNo description
PfamPF000464.8E-1761114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-2062121IPR009057Homeodomain-like
PRINTSPR000311.4E-58695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000311.4E-595111IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNNQNLDDHN LLLISQLYPN VYTPLVPQQG EAKPARRRKR KSKSVAVAEE GGAEGSGWFR  60
KRKLSDEQVR MLEISFEDDH KLESERKDRL ASELGLDPRQ VAVWFQNRRA RWKNKRVEDE  120
YTKIKNAYET TVVEKCRLDS EVLHLKEQLY EAEREIQRLA QRVEGTLSNS PISSSVTIEA  180
NHATPFFGDY DIGFDGEVDE NLLYSSDYID GLEWMSQFM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2505s0001.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0313620.0BT031362.1 Arabidopsis thaliana unknown protein (At2g18550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179445.11e-152homeobox protein 21
SwissprotQ9ZU701e-153ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLC0SV501e-151C0SV50_ARATH; Uncharacterized protein At2g18550 (Fragment)
STRINGAT2G18550.11e-152(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-126homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]