PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.2505s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 221aa MW: 25530.5 Da PI: 5.0926 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.2e-20 | 62 | 115 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Araha.2505s0001.1.p 62 KRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 115 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 120.6 | 7.9e-39 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kr+ls+eqv++LE sFe ++kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k++E +y+++k+ay++ + e++rL++ev +L+e+l Araha.2505s0001.1.p 61 RKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKIKNAYETTVVEKCRLDSEVLHLKEQL 150 8***************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 e Araha.2505s0001.1.p 151 YE 152 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.29E-18 | 54 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-20 | 59 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.34E-17 | 61 | 117 | No hit | No description |
Pfam | PF00046 | 4.9E-17 | 62 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 63 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MNNQNLDDHN LLLISQLYPN VYTPLVPQQA GEAKPARRRK RKSKSVAVAE EGGAEGSGWF 60 RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR QVAVWFQNRR ARWKNKRVED 120 EYTKIKNAYE TTVVEKCRLD SEVLHLKEQL YEAEREIQRL AQRVEGTLSN SPISSSVTIE 180 ANHATPFFGD YDIGFDGEVD ENLLYSSDYI DGLEWMSQFM * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.2505s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT031362 | 0.0 | BT031362.1 Arabidopsis thaliana unknown protein (At2g18550) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179445.1 | 1e-154 | homeobox protein 21 | ||||
Swissprot | Q9ZU70 | 1e-155 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | C0SV50 | 1e-153 | C0SV50_ARATH; Uncharacterized protein At2g18550 (Fragment) | ||||
STRING | AT2G18550.1 | 1e-154 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-127 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Araha.2505s0001.1.p |
Publications ? help Back to Top | |||
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