PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24955s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 265aa    MW: 29975.9 Da    PI: 9.216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24955s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-0597119223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +C+ C+++++++ +L  Hi+  H
  Araha.24955s0004.1.p  97 SCSVCSRVYPTSRLLSIHISEaH 119
                           6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.576994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM00355596119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.069134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAMGMAVDTV GELGFPYWNP IRRRFSPDSP FFASGNVERE LLAKQVALDL TEDEINHLQK  60
FVETESRRIS CPIVGCPVRL KSLDHFEDHY NARHTASCSV CSRVYPTSRL LSIHISEAHD  120
SFFQAKVARG YDMYECLVEG CGLKFKSYKA RHRHLIDKHK FPSTFEFFKK TQLSKKRREK  180
LQRQHVPRLK HEDDKEAASS DAMEVEDKSS VDGLVSALST LTTSDTTPSN VSFGRRHGRG  240
LTFVPRSVHK EKRTESSSAP GPTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.24955s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196918.20.0nucleic acid binding / zinc ion binding protein
TrEMBLA0A178UDE40.0A0A178UDE4_ARATH; Uncharacterized protein
TrEMBLQ0WRF40.0Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein
STRINGAT5G14140.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-179zinc ion binding;nucleic acid binding;zinc ion binding