PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.24841s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 192aa MW: 21749.1 Da PI: 9.3321 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 85.6 | 6.5e-27 | 1 | 73 | 19 | 97 |
DUF573 19 lidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +idfka+tg+sp+dd+++f++++k+sisf+vsk+q+ +Kir LK+K+ +k+kk +s++++hd+k++el+k+iWg Araha.24841s0001.1.p 1 MIDFKAETGTSPYDDMNKFFDIAKESISFDVSKNQFGDKIRGLKNKYFGKRKK------KSVESDHDKKCLELAKSIWG 73 9****************************************************......8999***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.0E-18 | 1 | 73 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MIDFKAETGT SPYDDMNKFF DIAKESISFD VSKNQFGDKI RGLKNKYFGK RKKKSVESDH 60 DKKCLELAKS IWGLGVVESP VKSKKKKDES VAKANGKDKN LESLVEEDKE VGILRGDSES 120 SNWFDKSFLV RVVASLGVDE CIVKWKWSKV TMDTKKRIEE KMKLVEGKEF ELLSQKIDVL 180 KEVISVIAET I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.24841s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY042861 | 8e-89 | AY042861.1 Arabidopsis thaliana Unknown protein (T12C22.8) mRNA, complete cds. | |||
GenBank | AY072504 | 8e-89 | AY072504.1 Arabidopsis thaliana unknown protein (At1g44810; T12C22.8) mRNA, complete cds. | |||
GenBank | CP002684 | 8e-89 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T12C22 | 8e-89 | AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886805.1 | 1e-126 | probable transcription factor At1g44810 | ||||
Swissprot | Q9LPF0 | 4e-80 | STKLB_ARATH; Probable transcription factor At1g44810 | ||||
TrEMBL | D7L6G9 | 1e-100 | D7L6G9_ARALL; Uncharacterized protein | ||||
STRING | scaffold_303870.1 | 1e-101 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44810.1 | 5e-82 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Araha.24841s0001.1.p |
Publications ? help Back to Top | |||
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