PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2449s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family STAT
Protein Properties Length: 679aa    MW: 76528.3 Da    PI: 4.7621
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2449s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT195.64.8e-612213381117
                 STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 
                          ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++d+eapLL+sy+Gvefs+ed+p++ll+G+asfklk+sqLssk+d+rLf++kfeip
  Araha.2449s0002.1.p 221 LDVVLTNAIGQPVHKDVKVVASLLYADSGTPVEKMSDSEAPLLVSYEGVEFSAEDKPCNLLNGCASFKLKLSQLSSKSDKRLFCVKFEIP 310
                          8***************************************************************************************** PP

                 STAT  91 klkk.ypfleavskpirCisrsrntrss 117
                          ++k+ ypfle+v+++irCisr++++ + 
  Araha.2449s0002.1.p 311 EVKAyYPFLETVTNQIRCISRNHDSLTP 338
                          ***988****************997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF133856.0E-719148No hitNo description
Gene3DG3DSA:2.60.120.2002.5E-523146IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498998.87E-926165IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103385.45E-65576678No hitNo description
SuperFamilySSF555501.61E-12584673IPR000980SH2 domain
Gene3DG3DSA:3.30.505.102.8E-8584642IPR000980SH2 domain
PROSITE profilePS5000110.449587678IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MAGDCAIDTE KYSLLEDFYV DVEVENKAFE TFSLCFWVYL LDSTTYPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMMLLPLTL LHKEAPDPVN ISSWTEVPNV STTAEFPLQK WVHVGCEVSR  120
NYMRLYICGE IVGEQVLTSL MTNGTNSDCA RKISLFSVGG DGYSVQGFIH CAEVLPSNVP  180
ANYHYTKDPP LWLSVDKPST SGIGLDKDGV WIIVSGTFCS LDVVLTNAIG QPVHKDVKVV  240
ASLLYADSGT PVEKMSDSEA PLLVSYEGVE FSAEDKPCNL LNGCASFKLK LSQLSSKSDK  300
RLFCVKFEIP EVKAYYPFLE TVTNQIRCIS RNHDSLTPKR SNHIDYPLDG GEPELASRSN  360
GTSDILHSSS SMKRIRLGEE KVSESEIENG NGTSMEWRPQ NHEEEEEEEE EDNSSTDSEN  420
TEIRDSTAFR RYTIPDSIIF KYCLGNLTER ALLLKEITNN SSDEEVSEFA DQVSLYSGCS  480
HHSYQIKMAR ELIVEGTNAW NLISRNYQHV HWDNVVIEIE EHFMRIAKCS SRSLTHQDFD  540
LLRRICGCYE YITQENFEKM WCWLFPVASA ISRGLINGMW RSASPKWIEG FVTKEEAERS  600
LQNQVAGTFI LRFPTSRSWP HPDAGSLVVT YVGHDLVIHH RLLAIGHICD SSERYTDAKP  660
LQDMLLAEPE LSRLGRII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2449s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872922.10.0uncharacterized protein LOC9306855
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLD7MJN20.0D7MJN2_ARALL; Uncharacterized protein (Fragment)
STRINGBostr.7128s0312.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]