PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.24446s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 26503.2 Da PI: 7.0218 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.9 | 4.1e-09 | 75 | 109 | 1 | 37 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskK 37 +r++h+e Er+RR++i s f +Lr +lP+++ ++kK Araha.24446s0003.1.p 75 KRAKHKELERQRRQEITSLFKNLRYILPSQY--TKKK 109 79***************************63..3333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.41E-6 | 72 | 109 | No hit | No description |
SuperFamily | SSF47459 | 2.04E-7 | 72 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.553 | 74 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-7 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 75 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDFPDSSLFI PDFAYENDLD FSTLITPSTH ISFQEPYPCN PVIRCAGTEN DGRQKACETT 60 MTSEIRKGDD EPRNKRAKHK ELERQRRQEI TSLFKNLRYI LPSQYTKKKI KEVSEKRDRI 120 KRSITHPSST GECSIRSVTS STCSCVGDTH IAVVVRPCLI GLEIVVSCCI RHEYCLSNVL 180 QLLAQEQCFN VVSCNSTRLY QRIVHTIVSE VEEGIEVYFS ELQENIIKMG TP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 86 | KRAKHKELERQRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.24446s0003.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488589 | 1e-149 | AF488589.1 Arabidopsis thaliana clone bHLH055 putative bHLH transcription factor mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020869346.1 | 1e-149 | LOW QUALITY PROTEIN: transcription factor bHLH55 | ||||
Swissprot | Q9LN95 | 1e-134 | BH055_ARATH; Transcription factor bHLH55 | ||||
TrEMBL | A0A178W3V0 | 1e-135 | A0A178W3V0_ARATH; Uncharacterized protein | ||||
STRING | AT1G12540.1 | 1e-132 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12540.1 | 1e-136 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.24446s0003.1.p |
Publications ? help Back to Top | |||
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