PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.24306s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 192aa MW: 22898.9 Da PI: 7.5544 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.3 | 2.3e-17 | 11 | 65 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le F+ ++++ +e++ ++A+++gL +qV vWFqNrRa++k Araha.24306s0002.1.p 11 KKRRLSVDQIKTLEMNFKAeENKLEQERKVRIADETGLHPNQVAVWFQNRRARWK 65 456899************88**********************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.4 | 8.1e-38 | 10 | 103 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrls +q+k+LE++F++ee kLe+erKv++a e gl+p qvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk e ++Le+e++ L+ Araha.24306s0002.1.p 10 EKKRRLSVDQIKTLEMNFKAEEnKLEQERKVRIADETGLHPNQVAVWFQNRRARWKTKQLERDYCVLKAHYDSLKLEYNNLEHETQVLT 98 69*****************9887****************************************************************** PP HD-ZIP_I/II 89 eelke 93 ++lke Araha.24306s0002.1.p 99 SKLKE 103 *9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.0E-14 | 9 | 71 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.078 | 10 | 67 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.1E-15 | 11 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-14 | 11 | 65 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.91E-11 | 11 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-17 | 18 | 66 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 42 | 65 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.5E-14 | 67 | 108 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEQDTFSLGE KKRRLSVDQI KTLEMNFKAE ENKLEQERKV RIADETGLHP NQVAVWFQNR 60 RARWKTKQLE RDYCVLKAHY DSLKLEYNNL EHETQVLTSK LKELRTKVRE EKREEEHTMS 120 LKEQKRETEE ENDKIFQMVP TSHNGLCSST TLGSMAEPCQ FRNYPEKEII MVKLKELRNL 180 NYVDYGSNLQ W* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 67 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.24306s0002.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002893860.1 | 1e-124 | homeobox-leucine zipper protein HOX4 | ||||
Swissprot | Q6K498 | 1e-35 | HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4 | ||||
Swissprot | Q9XH37 | 1e-35 | HOX4_ORYSI; Homeobox-leucine zipper protein HOX4 | ||||
TrEMBL | D7KL47 | 1e-123 | D7KL47_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0001_3626 | 1e-124 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25291 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 5e-34 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Araha.24306s0002.1.p |
Publications ? help Back to Top | |||
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