PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23900s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 333aa    MW: 37345.8 Da    PI: 8.6632
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23900s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W++eEd +l d+++++G+g +W + + + g++R++k+c++rw++yl
  Araha.23900s0002.1.p 14 RGPWSPEEDSKLRDYIEKYGNGgNWISLPLKAGLRRCGKSCRLRWLNYL 62
                          89*********************************************97 PP
2Myb_DNA-binding414.4e-1369111246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g +++eEd ++  +++  G++ W+ Ia++++ gRt++++k++w++
  Araha.23900s0002.1.p  69 GDFSEEEDMIIFSLFAAIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111
                           789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.911962IPR017930Myb domain
SuperFamilySSF466892.33E-2712109IPR009057Homeodomain-like
SMARTSM007171.2E-111364IPR001005SANT/Myb domain
PfamPF002494.5E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231569IPR009057Homeodomain-like
CDDcd001674.74E-91662No hitNo description
PROSITE profilePS5129422.17563117IPR017930Myb domain
SMARTSM007174.5E-1367115IPR001005SANT/Myb domain
PfamPF002494.6E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2370117IPR009057Homeodomain-like
CDDcd001671.00E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS LPLKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSEEEDMIIF SLFAAIGSRW SIIAAHLPGR TDNDIKNYWN TKLRKKLLSS  120
SSSSSHSSSA MASPYLNPNS QDVKRPLTPS TTIPSSSYNP YAENPNHYPT KSFISSINGF  180
EADEKQILPY ISPNYPQDLS LSDSNNNAWC ASGFLLSHNL CDQYNNHTSF SSNVNGKRSE  240
IMMKQEETMM MMMMVDHHID QRTKGYNGDF TQGYYNYYTG HGDLKQMISG TGTNSNINMG  300
CSGSSSSSIS NLAENKSSNS LLQHKCLPYF YS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23900s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1755070.0AK175507.1 Arabidopsis thaliana mRNA for myb like transcription factor (MYB37), complete cds, clone: RAFL21-93-G12.
GenBankAY5196280.0AY519628.1 Arabidopsis thaliana MYB transcription factor (At5g23000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872028.10.0transcription factor RAX1
SwissprotQ9FG680.0RAX1_ARATH; Transcription factor RAX1
TrEMBLD7M1L60.0D7M1L6_ARALL; Predicted protein
STRINGAl_scaffold_0006_21710.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140131623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.11e-165myb domain protein 37
Publications ? help Back to Top
  1. Schnaubelt D,Schulz P,Hannah MA,Yocgo RE,Foyer CH
    A phenomics approach to the analysis of the influence of glutathione on leaf area and abiotic stress tolerance in Arabidopsis thaliana.
    Front Plant Sci, 2013. 4: p. 416
    [PMID:24204368]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Yu YT, et al.
    Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(3): p. 267-79
    [PMID:26646286]