PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.23368s0027.3.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 464aa MW: 50285.9 Da PI: 9.6056

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.23368s0027.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	83	103	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H Araha.23368s0027.3.p 83 CEVCNKGFQREQNLQLHRRGH 103 *******************88 PP
2	zf-C2H2	12.9	0.00034	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Araha.23368s0027.3.p 157 WKCDKCSKRYAVQSDWKAHSKTC 179 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.6E-6	80	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.06E-7	80	103	No hit	No description
PROSITE profile	PS50157	10.97	81	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.025	81	103	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	122	152	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.9E-5	145	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.06E-7	152	177	No hit	No description
SMART	SM00355	140	157	177	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MSSSYNTIAS SSAQTFLLSG AASGARPNNF NREEAARTMI QQPNSSVTPP PKKRRNQPGN 60 PNPDAEVIAL SPKTIMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKSNKEVRRK 120 VYLCPEASCV HHDPARALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG 180 TKEYRCDCGT IFSRRDSYIT HRAFCDALIQ ESARNPTVSF TAMAAAGGGG ARHGFYGGAS 240 SAHSHNLFGN NSNSGFTPLA AGYNLNRSSS DKFEDFVPQS TNPNPGPTNF LMQCSPNQGL 300 LAQNNQSLMN QHGLISLGDN TNHNLFNIGY FQDTKNSDQI GVPSLFTNGA DNNDPSAFLR 360 GLTSSSSPNV VVNDFGDSDN GNLQGLMNSL TATTDQQGRP TSLLDLHFGN NLSMGGADRL 420 TLDFLGVNGG IVSTVNGRGG RGGGPPLDAE MKFSHPNHPF GKA*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MSSSYNTIAS SSAQTFLLSG AASGARPNNF NREEAARTMI QQPNSSVTPP PKKRRNQPGN  60
PNPDAEVIAL SPKTIMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKSNKEVRRK  120
VYLCPEASCV HHDPARALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG  180
TKEYRCDCGT IFSRRDSYIT HRAFCDALIQ ESARNPTVSF TAMAAAGGGG ARHGFYGGAS  240
SAHSHNLFGN NSNSGFTPLA AGYNLNRSSS DKFEDFVPQS TNPNPGPTNF LMQCSPNQGL  300
LAQNNQSLMN QHGLISLGDN TNHNLFNIGY FQDTKNSDQI GVPSLFTNGA DNNDPSAFLR  360
GLTSSSSPNV VVNDFGDSDN GNLQGLMNSL TATTDQQGRP TSLLDLHFGN NLSMGGADRL  420
TLDFLGVNGG IVSTVNGRGG RGGGPPLDAE MKFSHPNHPF GKA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-34	153	219	3	69	Zinc finger protein JACKDAW
5b3h_F	4e-34	153	219	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00142	DAP	Transfer from AT1G14580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.23368s0027.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091041	0.0	AY091041.1 Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds.
GenBank	AY133766	0.0	AY133766.1 Arabidopsis thaliana clone U18944 putative zinc finger protein (At1g14580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020869197.1	0.0	protein indeterminate-domain 6, chloroplastic isoform X1
Swissprot	Q8RWX7	0.0	IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBL	D7KBM3	0.0	D7KBM3_ARALL; T5E21.8
STRING	fgenesh1_pm.C_scaffold_1001236	0.0	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.2	0.0	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Araha.23368s0027.3.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]