PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.22764s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 427aa    MW: 46353.5 Da    PI: 6.9787
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.22764s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08101123326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           ++lC+f+   G C+yGd+C++ H+
  Araha.22764s0004.1.p 101 EKLCKFWVD-GNCPYGDKCRYLHC 123
                           579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.852652IPR000571Zinc finger, CCCH-type
SMARTSM003560.0852851IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-698122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.68598125IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6100124IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-6101123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-7102120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.8E-17121236IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.9E-6129168IPR001680WD40 repeat
SuperFamilySSF509781.46E-45129419IPR017986WD40-repeat-containing domain
PfamPF004001.8E-4132168IPR001680WD40 repeat
PROSITE profilePS5008213.316136177IPR001680WD40 repeat
PROSITE profilePS5029421.094136338IPR017986WD40-repeat-containing domain
PRINTSPR003204.6E-6155169IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780155169IPR019775WD40 repeat, conserved site
SMARTSM003201.2208245IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.106.0E-31237419IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.32252289IPR001680WD40 repeat
PROSITE profilePS5008211.31259298IPR001680WD40 repeat
PRINTSPR003204.6E-6276290IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4292329IPR001680WD40 repeat
PfamPF004000.0028294328IPR001680WD40 repeat
PRINTSPR003204.6E-6316330IPR020472G-protein beta WD-40 repeat
SMARTSM0032014333376IPR001680WD40 repeat
SMARTSM003202.8379416IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDLDMNGGNK RVFQRLSGGS NRPTTDSNQK VCFHWRAGRC NRYPCPYLHR ELPGPGPSST  60
NKRVADESGF AGPSHRRGPG FSGTANNWGG FGGNRTVTKT EKLCKFWVDG NCPYGDKCRY  120
LHCWSQGDSF SLLTQLDGHQ KVVTGIALPS GSDKLYTASK DETVRIWDCA SGQCTGVLNL  180
GGEVGCMISE GPWLLVGMPN LVKAWNIQNN VDLSLTGPVG QVYSLVVGTD LLFAGTQDGS  240
ILVWRYNSTT SCFDPAASLM GHTLAVVSLY VGANRLYSGA MDNSIKVWSL DNLQCIQTLT  300
EHTSVVMSLI CWDQFLLSCS LDNTVKIWAA TEGGNLEVTY THKEEYGVLA LCGVHDAEAK  360
PVLLCSCNDN SLHLYDLPSF TERGKILAKQ EIRSIQIGPG GIFFTGDGSG QVKVWKWSTE  420
PTAILP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-201334198323Tako8
6g6n_A2e-201334198323Tako8
6g6n_B2e-201334198323Tako8
6g6n_C2e-201334198323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.22764s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873500.10.0zinc finger CCCH domain-containing protein 48
RefseqXP_020873501.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A178V1120.0A0A178V112_ARATH; ZFWD1
STRINGBostr.7867s0357.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1