PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.22229s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 382aa    MW: 42410.3 Da    PI: 5.6603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.22229s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.2e-142168148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT  Ede l+ +v+++G g+W+++ ++  + R++k+c++rw ++l
  Araha.22229s0004.1.p 21 KGPWTVAEDETLAAYVREYGEGNWNAVQKKTWLARCGKSCRLRWANHL 68
                          79******************************************9986 PP
2Myb_DNA-binding52.89.3e-1774117146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g++T+eE+ l+++++ qlG++ W++ a+ ++ gRt++++k++w++
  Araha.22229s0004.1.p  74 KGSFTPEEERLIIQLHSQLGNK-WARMAAQLP-GRTDNEIKNYWNT 117
                           799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.351668IPR017930Myb domain
SuperFamilySSF466891.8E-2920115IPR009057Homeodomain-like
SMARTSM007171.9E-102070IPR001005SANT/Myb domain
PfamPF002491.1E-122168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-222275IPR009057Homeodomain-like
CDDcd001674.60E-102368No hitNo description
PROSITE profilePS5129425.99469123IPR017930Myb domain
SMARTSM007172.6E-1673121IPR001005SANT/Myb domain
PfamPF002491.7E-1574117IPR001005SANT/Myb domain
CDDcd001673.23E-1276119No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2576121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MIIYGGGASE DGGGGGVVLK KGPWTVAEDE TLAAYVREYG EGNWNAVQKK TWLARCGKSC  60
RLRWANHLRP NLRKGSFTPE EERLIIQLHS QLGNKWARMA AQLPGRTDNE IKNYWNTRLK  120
RFQRQGLPLY PPDISPNNHQ QQMYPQQPNT PSSPLPSPTP ASSFTFPLLQ PPSLCPKRCY  180
NTAFSPKASY TSSPTFLNTQ SPLSSYQSTN PVYSMKHELS SNPIPYSASL GVYQVSKFLG  240
NGDCNQNLNT GLHTTTCQLL EDLMEEAEAL ADSFRAPKRR QLMAALEENN NNFFSGSFGH  300
CGSSNSLYSL QGLTPKEDES LQMNMQDEDI TKLLDWGSES EEISNGQSSV ITTEDNIVLD  360
DHQFTLLFPV DDNTNNLPGI C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-31181211103C-Myb DNA-Binding Domain
1msf_C2e-31181211103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279RAPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.22229s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1760020.0AF176002.1 Arabidopsis thaliana putative transcription factor (MYB97) mRNA, complete cds.
GenBankDQ6532260.0DQ653226.1 Arabidopsis thaliana clone 0000013222_0000009532 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869586.10.0transcription factor MYB97
SwissprotQ9S7730.0MYB97_ARATH; Transcription factor MYB97
TrEMBLD7MEL00.0D7MEL0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__1539__AT4G26930.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.10.0myb domain protein 97
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]