PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21080s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 542aa    MW: 60586.9 Da    PI: 7.6377
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21080s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-1775121148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT+eEde l +av ++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Araha.21080s0002.1.p  75 KGGWTPEEDETLRRAVDKYKGKRWKKIAEFFP-ERTEVQCLHRWQKVL 121
                           688*****************************.************986 PP
2Myb_DNA-binding61.91.3e-19127173148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+WT+eEd+++v++vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Araha.21080s0002.1.p 127 KGPWTQEEDDKIVELVKKYGPAKWSVIAKSLP-GRIGKQCRERWHNHL 173
                           79******************************.*************97 PP
3Myb_DNA-binding46.68.1e-15179222146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++WT eE+  l + ++++G++ W+ Ia+ ++ gRt++ +k++w++
  Araha.21080s0002.1.p 179 KDAWTIEEESALMNSHRMYGNK-WAEIAKVLP-GRTDNAIKNHWNS 222
                           679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.51870121IPR017930Myb domain
SMARTSM007179.8E-1674123IPR001005SANT/Myb domain
PfamPF002495.4E-1675121IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-1676131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2377129IPR009057Homeodomain-like
CDDcd001676.10E-1478121No hitNo description
PROSITE profilePS5129431.882122177IPR017930Myb domain
SuperFamilySSF466897.34E-32124220IPR009057Homeodomain-like
SMARTSM007173.9E-18126175IPR001005SANT/Myb domain
PfamPF002492.3E-18127173IPR001005SANT/Myb domain
CDDcd001671.65E-15129173No hitNo description
Gene3DG3DSA:1.10.10.607.7E-27130176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-22177228IPR009057Homeodomain-like
PROSITE profilePS5129421.069178228IPR017930Myb domain
SMARTSM007171.7E-13178226IPR001005SANT/Myb domain
PfamPF002492.8E-13179222IPR001005SANT/Myb domain
CDDcd001673.30E-10181224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSSSSNPAAC SPEKEERSEL KIEIQCMENK QPLAASCSSA SEGSGCFFLK SPEIATPATV  60
SSTPRRTSGP MRRAKGGWTP EEDETLRRAV DKYKGKRWKK IAEFFPERTE VQCLHRWQKV  120
LNPELVKGPW TQEEDDKIVE LVKKYGPAKW SVIAKSLPGR IGKQCRERWH NHLNPGIRKD  180
AWTIEEESAL MNSHRMYGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLEF YLATGNLPPP  240
ATKFSVLNDI GDGDRDSKQS SATKPFKDSD SVTQTSSGNT DSNEVGRDHF DYSSALLEEV  300
AASRRIGVNE YACSPVEYKP QLPNLEPISE EVRINLKAYG ERSIQRKEEN GFGTPKHGSL  360
YYKSPLDYYF PSEADLQHMY GYECCCSPGA ASPVSLMTPP CNKDSGLAAT RSPESFLREA  420
ARTFPNTPSI FRKRRKVVLA AKADDVVVNV GVKEVDQKED SKDSSDISPA GRESLLLETT  480
DDCRDDDKLE SNGNAFNVSP PYRLRAKRTA VIKSRQLEFT FAKEKHETET SELASEEDKP  540
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-69742285159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-69742285159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21080s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196490.0AY519649.1 Arabidopsis thaliana MYB transcription factor (At5g02320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873047.10.0transcription factor MYB3R-5
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLD7M7S20.0D7M7S2_ARALL; Myb domain protein 3R-5
STRINGfgenesh1_pm.C_scaffold_60001240.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]