PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20504s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 334aa    MW: 38592.1 Da    PI: 8.7669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20504s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-06248270123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+Cp+C+ +F+++ ++  H+++H
  Araha.20504s0001.1.p 248 YTCPKCNGVFNTSQQFAAHMSSH 270
                           9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.002248270IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349248275IPR007087Zinc finger, C2H2
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSSIPNRLYI YGDDSRNHRD FFPIEMNHNS KMVRSMFTAY DCSNHRDLFS SSPSFSCYQN  60
SHVSSSSFGF NNSHMLNHMM RRNIDYVSGT DYLPIKDNPH LTKVSFTQTI TNRYSSIAPA  120
NTLDGVQYDI ERVKRAMDSK PNIWNPILHP PNFLDKQCKI LTPEPLNVIF PRQNSADRQH  180
LNFFSLSSKH NHDQNICHEG RSLEKVSKPT IFSKKTNDYI DCEKTEETDD DQYDGRTHSL  240
PYEKYGPYTC PKCNGVFNTS QQFAAHMSSH YKGETNKERD QRFRARNKRK YRKLNPEVYG  300
KSQKMKPEDG VNSGIKSDGE TIQNLGIVKE EIV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20504s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884137.10.0uncharacterized protein LOC9322244
TrEMBLD7L0760.0D7L076_ARALL; Uncharacterized protein
STRINGscaffold_304203.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.11e-148C2H2-like zinc finger protein