PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20436s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 229aa    MW: 24552.1 Da    PI: 10.6365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20436s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.4e-14135179347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
  Araha.20436s0006.1.p 135 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 179
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.581128184IPR017930Myb domain
SuperFamilySSF466893.37E-17130184IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-18131182IPR006447Myb domain, plants
SMARTSM007171.7E-10132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-11134178IPR009057Homeodomain-like
CDDcd001677.13E-10135180No hitNo description
PfamPF002492.2E-11135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGGGTCGGSG GGGGGGGSCS SSAVKLFGVR LTDGSIIKKS  60
ASMGNLSALA VAAAAATHHR LSPSSPLATS NLNDSPLSDH ARYSNLHHNE GYLSDDPAHG  120
SGSSHRRGER KRGVPWTEEE HRLFLVGLQK LGKGDWRGIS RNYVTSRTPT QVASHAQKYF  180
IRHTSSSRRK RRSSLFDMVT DEMVTDSSPT QEDQSHQTLN HFSPKIRQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20436s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0058320.0BT005832.1 Arabidopsis thaliana At3g16350 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889168.11e-122transcription factor MYBS3
SwissprotQ7XC573e-68MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLD7L5N91e-120D7L5N9_ARALL; Uncharacterized protein
TrEMBLO043221e-120O04322_ARATH; Myb-related transcription activator (MybSt1) isolog
STRINGfgenesh2_kg.3__1788__AT3G16350.11e-121(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-119MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]