PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20256s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 388aa    MW: 44103.7 Da    PI: 10.0486
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20256s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19229279256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  Araha.20256s0004.1.p 229 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 279
                           59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.60E-31228288No hitNo description
SMARTSM003807.6E-35229292IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22229287IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-32229287IPR001471AP2/ERF domain
PROSITE profilePS5103222.682229286IPR001471AP2/ERF domain
PfamPF008471.7E-12230279IPR001471AP2/ERF domain
PRINTSPR003674.3E-11230241IPR001471AP2/ERF domain
PRINTSPR003674.3E-11252268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MITPIHTQHS LIIVYINIYS PLISSKLRQA LFSGQILKKQ TKNMNMEDQF PKIETSFMHD  60
KLLSSGFYGI LSSSTPPQLL GVPIFLEGMK SPLLPPSSTP RYFVSPHDEL TSSIHQSPIA  120
SVPWNFLESF PQSQRPDHPS KPPNLTLFLK EPKLLELSQS DNNMSPYHKY IPNSLYQSDQ  180
NRNEWVEINK TLTNYPSKGF GNYWLSTTKT QPMKSKTRKV VQTTTPTKLY RGVRQRHWGK  240
WVAEIRLPRN RTRVWLGTFE TAEQAAMAYD TAAYILRGEF AHLNFPDLKH QLKSGSLRCM  300
IASLLESKIQ QISSSQVSNS PSPPPPPKVG TSEPKNHHMK MESGEEVMMK KQKIHKEVME  360
GDGVQLSRMP SLDMDLIWDA LSFPHSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21228286160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-21228286463ATERF1
3gcc_A6e-21228286463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20256s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355280.0AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project).
GenBankAL1615370.0AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37.
GenBankBT0297290.0BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874943.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLD7MHD90.0D7MHD9_ARALL; Uncharacterized protein (Fragment)
STRINGAT4G13620.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.10.0ERF family protein