PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20073s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 257aa    MW: 28844 Da    PI: 8.6307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20073s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-1473125155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           ++++h  +Er+RR+++ s f  Lr+llP       ++K s ++   +Av+YIk+Lq
  Araha.20073s0004.1.p  73 KKVKHRDIERQRRQEVSSLFKSLRTLLPFqY---IQGKRSTSDHIFQAVNYIKDLQ 125
                           6899*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-1569145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.51E-1470129No hitNo description
PROSITE profilePS5088814.32972124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-1273125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-1273141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-578130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDFLPSMFMP DSTYEDGLLF SDSFLLSPFI SYQNNDVCNP ITNKIGGSNK KRSLYDTYGA  60
TEANKNDDDR ESKKVKHRDI ERQRRQEVSS LFKSLRTLLP FQYIQGKRST SDHIFQAVNY  120
IKDLQTKIKE LNEKRNQIKK SLPGTSTTLP SIEECTSSLS STSTLSSSCS CVGDKHITVV  180
VTPCLVGVEI ILSCCLGRNK SCLSSVLQML AQEQRLSVVS CLSSSRQQRF MHTIVSQVED  240
GKKINILDLK DKIMNM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20073s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2280360.0AK228036.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-54-L04.
GenBankBT0064080.0BT006408.1 Arabidopsis thaliana At1g62975 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889682.11e-157transcription factor bHLH125
SwissprotQ9LQ081e-150BH125_ARATH; Transcription factor bHLH125
TrEMBLD7KU431e-154D7KU43_ARALL; Uncharacterized protein (Fragment)
STRINGBostr.22157s0026.1.p1e-156(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-115bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]