PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20024s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 270aa    MW: 30138.8 Da    PI: 8.3921
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20024s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.52.9e-15185209226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ktelC+ +++tGtC+yGd C+FaHg
  Araha.20024s0002.1.p 185 KTELCNKWQETGTCPYGDHCQFAHG 209
                           9***********************8 PP
2zf-CCCH20.21.1e-06222247126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykte Cr  +++  C+yG rC+F H+
  Araha.20024s0002.1.p 222 YKTEVCRMVLAGDNCPYGHRCHFRHS 247
                           9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.98E-11183215IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9183210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23183211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-17184216IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12185209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-9217252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-13217250IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5221248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272221249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MENKIAPFSY SGSSADVVGI KKSQGDSSCS GVVSSSLYSD QLYKSTRNIM QQRQDMVNRE  60
ALCYTRLHEA SLEAEALRLE NIELRSMNRH LKTELNSLIR SSIQNRFDLR SPLRMLSNLS  120
IGGNDADEVE NQNQNRTVNR DDVSDESPTS VMENEDLNRS SLPKSISVRS SGYSKASQGG  180
GGMTKTELCN KWQETGTCPY GDHCQFAHGI KELRPVIRHP RYKTEVCRMV LAGDNCPYGH  240
RCHFRHSLSE QEKLVAAGFK PKSSLKLLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-23185250570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20024s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0164470.0AC016447.5 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence, complete sequence.
GenBankBT0260770.0BT026077.1 Arabidopsis thaliana At1g68200 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ0565140.0DQ056514.1 Arabidopsis thaliana zinc finger (CCCH-type) family protein (At1g68200) mRNA, complete cds.
GenBankDQ4464100.0DQ446410.1 Arabidopsis thaliana clone pENTR221-At1g68200 zinc finger family protein (At1g68200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889723.11e-178zinc finger CCCH domain-containing protein 15 isoform X1
RefseqXP_020889724.11e-178zinc finger CCCH domain-containing protein 15 isoform X2
SwissprotQ9C9F51e-153C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLD7KW931e-167D7KW93_ARALL; Zinc finger (CCCH-type) family protein (Fragment)
STRINGfgenesh2_kg.2__1068__AT1G68200.11e-168(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-137C3H family protein