PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.19929s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 268aa MW: 30199.2 Da PI: 4.4169 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.8e-09 | 18 | 42 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W+ Iar+++ +Rt++++k++w+++l Araha.19929s0001.1.p 18 RWSVIARHLP-KRTDNEIKNYWNTHL 42 4*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.571 | 1 | 46 | IPR017930 | Myb domain |
CDD | cd00167 | 5.70E-8 | 5 | 42 | No hit | No description |
SuperFamily | SSF46689 | 4.52E-9 | 9 | 50 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-13 | 17 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-7 | 18 | 42 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009625 | Biological Process | response to insect | ||||
GO:0009682 | Biological Process | induced systemic resistance | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MPSEIARCEI YDLSLLKRWS VIARHLPKRT DNEIKNYWNT HLKKRLIDKG IDPVAHKPLA 60 YDSNPEEQSQ SGSISPKSLP PSSSYNVQEI SSSDETAKYD ASLSSKKRCF MRSSSTSKLL 120 NKVAARAASI GNILAASIQG TLISSTPLSS CLNDDFSETS QYQLEEFDPF YLQSSEHKID 180 DMKEDIGINN SEYDFSQFLE QFSKNEGEEA DNIGGGYNQD LLMSDVSSTS VDEDDMMKNI 240 TSWSHYLLDH SDFNYDTNQD YDDKNFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.19929s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by gibberellic acid (GA), jasmonic acid (JA, MeJA), nitrogen starvation and UV LIGHT treatment. Transiently repressed by salicylic acid (SA). Accumulates upon mechanical stimuli (e.g. wounding) in inflorescence. Down-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY350712 | 0.0 | AY350712.1 Arabidopsis arenosa clone BAC Aer6D24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879222.1 | 1e-157 | transcription factor MYB29 | ||||
Swissprot | Q9FLR1 | 1e-150 | MYB29_ARATH; Transcription factor MYB29 | ||||
TrEMBL | D7M0L6 | 1e-155 | D7M0L6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__738__AT5G07690.1 | 1e-156 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3787 | 18 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07690.1 | 1e-138 | myb domain protein 29 |
Link Out ? help Back to Top | |
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Phytozome | Araha.19929s0001.1.p |