PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1964s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 473aa    MW: 53612.4 Da    PI: 6.6292
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1964s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.4e-083904281854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  Araha.1964s0004.1.p 390 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 428
                          5887779******************************88 PP
2BELL93.42.2e-30265335172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r++l++kk++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i
  Araha.1964s0004.1.p 265 QRRALEAKKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERICKKI 335
                          6899*****************************************.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-61195333IPR006563POX domain
PfamPF075261.1E-26201331IPR006563POX domain
PROSITE profilePS5007110.981369432IPR001356Homeobox domain
SMARTSM003897.1E-5372436IPR001356Homeobox domain
CDDcd000867.75E-10372433No hitNo description
SuperFamilySSF466895.99E-15373441IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-25375438IPR009057Homeodomain-like
PfamPF059201.6E-14389428IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDNNNTFSSL DNVMTNQNPL LMDFIPSRED STSFSTMLPW NSIRSDPLQM GGFDIFNSML  60
TNKYLSSSSR SIDVQDNRNV ESIEFMAPPP PPLHPLDHLR PYDDSSNNMW GFEANSEFQT  120
TYSGVVGPSE PIMSTFGEED FPFLISNKRN NELSLSLATD VSDECSEISL CAATRLASEQ  180
ASCSSKDISN NVVTQGFSQL IFGSKYLPSV QEILSHFAAF SLDYSSRGTD SGAASSAFTS  240
RFENITEFLD GDSNNSEAGF GSTFQRRALE AKKTHLLDLL QMVDDRYSHC VDEIHTVVSA  300
FHAATELDPQ LHTRFALQTI SFLYKNLRER ICKKIISMGS VLERGKDKSQ ENSMFHQHCL  360
LQQLKRKNHQ IWRPQRGLPE KSVSVLRTWM FQNFLHPYPK DSEKHLLAIR SGLTRSQVSN  420
WFINARVRLW KPMIEEMYAE MNKRKLNNSH LQPNGATLRM PKSVMMSQAM QK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-14378436563Homeobox protein Meis2
3k2a_B8e-14378436563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1964s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721740.0AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankAY0965130.0AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankX801260.0X80126.1 A.thaliana AtH1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875138.10.0homeobox protein ATH1
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLD7M9B90.0D7M9B9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__829__AT4G32980.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]