PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19195s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 281aa    MW: 31542.1 Da    PI: 10.1274
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19195s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind312.41.5e-9522801301
             GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..................maflqrdkal 67 
                           md+dg  +rn+gyye + +++ nlg+ql+ si +r++k+    +++ l+   + + v++ d                  m++    ++l
  Araha.19195s0003.1.p   2 MDEDGLSNRNWGYYEAS-QFRPNLGFQLIPSIINRNEKPflspQNQSLNNFLTPSNVYRGDsssvmsypldytlsdapfMSY----SWL 85 
                           9**************99.*********************9998555554433444444444577777775566665555555....666 PP

             GAGA_bind  68 aernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqra 156
                           ++      +rd+k++++++++ s+       +  +++t+ + +  q                  l +++++ +++e+ ++++++ +qr+
  Araha.19195s0003.1.p  86 NQ------HRDSKFFSNVPTNASM-------SLLVPETSRMTQPMQ------------------LLQPEVVGEVDESLKRRHCSGGQRG 143
                           66......9**********77763.......345566665553222..................456788889999********88776 PP

             GAGA_bind 157 kkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
                           +  k+kk+kk k+        +++++++  rs   +ks+++v+ngvs+D+++lPvPvCsCtG+++qCY+WG+GGWqSaCCtt++SvyPL
  Araha.19195s0003.1.p 144 A-LKVKKEKKLKD--------NNMPRVQrARSPLLRKSVEMVINGVSMDIGGLPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSVYPL 223
                           5.57777777777........344555547899******************************************************** PP

             GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           P+stkrrgaRiagrKmSqgaf+k+LekL+++G+d+snp+DLk+hWAkHGtnkfvtir
  Araha.19195s0003.1.p 224 PISTKRRGARIAGRKMSQGAFRKVLEKLSSDGFDFSNPIDLKSHWAKHGTNKFVTIR 280
                           ********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.0E-1492280IPR010409GAGA-binding transcriptional activator
PfamPF062174.2E-842280IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MMDEDGLSNR NWGYYEASQF RPNLGFQLIP SIINRNEKPF LSPQNQSLNN FLTPSNVYRG  60
DSSSVMSYPL DYTLSDAPFM SYSWLNQHRD SKFFSNVPTN ASMSLLVPET SRMTQPMQLL  120
QPEVVGEVDE SLKRRHCSGG QRGALKVKKE KKLKDNNMPR VQRARSPLLR KSVEMVINGV  180
SMDIGGLPVP VCSCTGMPQQ CYRWGCGGWQ SACCTTNVSV YPLPISTKRR GARIAGRKMS  240
QGAFRKVLEK LSSDGFDFSN PIDLKSHWAK HGTNKFVTIR *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19195s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125630.0AC012563.7 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence.
GenBankBT0221170.0BT022117.1 Arabidopsis thaliana At1g68120 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865913.10.0protein BASIC PENTACYSTEINE3
RefseqXP_020865914.10.0protein BASIC PENTACYSTEINE3
SwissprotQ9C9X61e-171BPC3_ARATH; Protein BASIC PENTACYSTEINE3
TrEMBLD7KVR81e-180D7KVR8_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.2__1038__AT1G68120.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153471518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.11e-173basic pentacysteine 3