PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19039s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 340aa    MW: 37319.8 Da    PI: 4.7405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19039s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.9e-15128176153
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                           s+  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+ a ++++
  Araha.19039s0002.1.p 128 SKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAANAYAAKKLEF 176
                           7899*****9.**********72....36******************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.45E-19128174No hitNo description
PfamPF008471.1E-9128176IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-14129176IPR016177DNA-binding domain
SMARTSM003805.2E-13129183IPR001471AP2/ERF domain
PROSITE profilePS5103218.215129186IPR001471AP2/ERF domain
PRINTSPR003671.7E-6130141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-19132178IPR001471AP2/ERF domain
PRINTSPR003671.7E-6152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAERKKRSSV QTNKPHKKPM KKKTFQLNHL PGLSEDLKTM RKLRFVVNDP YATDYSSSEE  60
DERVQRRKRY VCEIDLPFAQ AATQAESESS YCQESSNNGG SKSKISACSK KVLSSKVSPV  120
VGRSSSVSKP VGVRQRKWGK WAAEIRHPIT KTRTWLGTYE TLEQAANAYA AKKLEFDALA  180
AATSAASSVL SDSNESGSMI SASGSNVEAV SSIDLDKKLV DSTLDPQAGE SKKATFDFDF  240
ADLQIPEMGY FIDESLIPNA CELDFLLTEE NNNQMLDDYC GIDDLDIIGL ECDGPSELPD  300
YDFSDVEIDL GLIGTTIDKY AFVDHISTTT TTPLNIACP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19039s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875289.10.0ethylene-responsive transcription factor ERF119
SwissprotQ9LUA20.0EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLD7LQW30.0D7LQW3_ARALL; Uncharacterized protein
STRINGscaffold_500470.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-157ERF family protein