PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.18894s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 410aa    MW: 43081.3 Da    PI: 5.4562
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.18894s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1728.8e-23303365163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           ++elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN+ L+ e+++lk ++++l++e+
  Araha.18894s0004.1.p 303 DRELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENTNLRAEINKLKSQCEELTAEN 365
                           689*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.3E-281103IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.7E-46142272No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-17296362No hitNo description
SMARTSM003382.6E-20303367IPR004827Basic-leucine zipper domain
PfamPF001701.3E-19304365IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.185305368IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-10306362No hitNo description
CDDcd147021.88E-24308358No hitNo description
PROSITE patternPS000360310325IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MASNGMEKSS KEKEPKTPPS SSAAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV  60
ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP SMPPGSYPYS PYAMPSPNGM  120
TEVSGNTTGG TEGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK  180
SGESASDGSS EGSDGNSQND SGSGLDGKDA EAASENGGSA NGPRNGSAGT PILPVSQTVP  240
IMPMTAAGVP GPPTNLNIGM DYWGAPTSAA IPGMHGKVST PVPGVVAPGS RDGGHSQPWL  300
QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE  360
LTAENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGDAER KVDSYKDTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319325RRSRLRK
2319326RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.18894s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0220550.0BT022055.1 Arabidopsis thaliana At2g35530 gene, complete cds.
GenBankBT0264410.0BT026441.1 Arabidopsis thaliana At2g35530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884547.10.0bZIP transcription factor 16
RefseqXP_020884548.10.0bZIP transcription factor 16
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A178VPW60.0A0A178VPW6_ARATH; BZIP16
STRINGAT2G35530.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.10.0basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]