PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.18637s0005.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 267aa MW: 30671.4 Da PI: 9.0705

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.18637s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.3	4.2e-51	18	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhP+d+elv++yL +++ ++ + v+ +vd++k+ePwd+p++++ + kewyf+s++d+ky+tg+r+nrat++gyWkatgkd Araha.18637s0005.1.p 18 LPPGFRFHPRDDELVCDYLMRRTVRSLYQP-VVLIDVDLNKCEPWDIPQMARVGGKEWYFYSQKDRKYTTGHRANRATATGYWKATGKD 105 79***************99977777555.5899*********9888999****************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + +g+lvg++ktLvfy+grapkg+ktdWvmhe+rl Araha.18637s0005.1.p 106 RAIQR-NGSLVGMRKTLVFYRGRAPKGRKTDWVMHEFRL 143 99.999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-59	10	168	IPR003441	NAC domain
PROSITE profile	PS51005	55.876	18	167	IPR003441	NAC domain
Pfam	PF02365	1.5E-25	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEEKEEKKGS ISMVEANLPP GFRFHPRDDE LVCDYLMRRT VRSLYQPVVL IDVDLNKCEP 60 WDIPQMARVG GKEWYFYSQK DRKYTTGHRA NRATATGYWK ATGKDRAIQR NGSLVGMRKT 120 LVFYRGRAPK GRKTDWVMHE FRLQETLLHH TSNSLKEEWV LCRVFHKNSN GPDRDDNTKS 180 SSNETASAFM DSYINFDHHI INQHVPCFSN NLSENQTNES GLVSKNSTPL FNASPDQMIL 240 RTLLSQLTKK VEKSESYGEG SSERAN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	13	171	12	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	13	171	12	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	13	171	12	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	13	171	12	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	13	171	15	172	NAC domain-containing protein 19
3swm_B	1e-52	13	171	15	172	NAC domain-containing protein 19
3swm_C	1e-52	13	171	15	172	NAC domain-containing protein 19
3swm_D	1e-52	13	171	15	172	NAC domain-containing protein 19
3swp_A	1e-52	13	171	15	172	NAC domain-containing protein 19
3swp_B	1e-52	13	171	15	172	NAC domain-containing protein 19
3swp_C	1e-52	13	171	15	172	NAC domain-containing protein 19
3swp_D	1e-52	13	171	15	172	NAC domain-containing protein 19
4dul_A	1e-52	13	171	12	169	NAC domain-containing protein 19
4dul_B	1e-52	13	171	12	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.18637s0005.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026645	1e-116	AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBank	CP002686	1e-116	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002882799.1	0.0	NAC domain-containing protein 21/22
Swissprot	Q84TE6	1e-121	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	D7L0M3	0.0	D7L0M3_ARALL; DNA binding protein
STRING	scaffold_301478.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3619	28	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12977.1	1e-172	NAC family protein

Link Out ? help Back to Top
Phytozome	Araha.18637s0005.1.p

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]