PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.18528s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 250aa MW: 28804.2 Da PI: 10.1011 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 89.5 | 3.9e-28 | 54 | 145 | 3 | 97 |
DUF573 3 fqrl.wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 +qrl wseeDei +LqG+ dfka t k+p+dd+++ yef+++ is++v+ ++veK+++LKkK ++v+ + keps s++h+qk+ e Araha.18528s0003.1.p 54 SQRLeWSEEDEIRVLQGMTDFKAITRKNPFDDMNGAYEFLQEYISVDVN--DFVEKMKSLKKKLMGQVRI--NAKEPSSSEPHYQKSSE 138 79999****************************************9995..8******************..99*************** PP DUF573 91 lskkiWg 97 l k iWg Araha.18528s0003.1.p 139 LLKLIWG 145 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.1E-19 | 59 | 145 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGKVNTNRSK KMKEVCGGSG EAKPTGKKRK NEVTSMDKDV SAKRSKKDAK KASSQRLEWS 60 EEDEIRVLQG MTDFKAITRK NPFDDMNGAY EFLQEYISVD VNDFVEKMKS LKKKLMGQVR 120 INAKEPSSSE PHYQKSSELL KLIWGYHVEP AVEKPKRSKR IIKPKEEKQV MVHEGGKWFE 180 NGLIVRKIVS FGVDEDSLKR KWGSVPMEEK DMIDQKWRVL RTKELEYILQ KEKFLNDVFS 240 MMDEAASSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.18528s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870618.1 | 1e-155 | probable transcription factor At4g00232 | ||||
Swissprot | Q3EAE7 | 1e-57 | STKLL_ARATH; Probable transcription factor At4g00232 | ||||
TrEMBL | D7MIR8 | 1e-154 | D7MIR8_ARALL; Uncharacterized protein | ||||
STRING | scaffold_703767.1 | 1e-155 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16691 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00232.1 | 2e-44 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Araha.18528s0003.1.p |