PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT4G00232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 154aa MW: 17665.4 Da PI: 10.3462 | ||||||||
Description | DNA-binding storekeeper protein-related transcriptional regulator | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 97.4 | 1.4e-30 | 41 | 135 | 2 | 97 |
DUF573 2 lfqrl.wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++q+l ws++De+++LqG++dfk+ tgk+p+ddi++ yefv +++ ++v +++++eK+++LKkK kkk++ ++k+ps s++ +qk+ e+ k+iWg AT4G00232.1 41 NSQMLkWSSKDEVLVLQGMLDFKSVTGKNPVDDINGAYEFVVHEYISTVIDEDFIEKMKSLKKKLKKKQRI--YDKDPSSSEPLYQKSSEWLKMIWG 135 689999*****************************************************************..***********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-18 | 46 | 135 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0025195 | anatomy | pollen tube cell |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 154 aa Download sequence Send to blast |
MDKANTNRSK VCGGSGEAKL TGKKRKNVSA KQSKKDAKKE NSQMLKWSSK DEVLVLQGML 60 DFKSVTGKNP VDDINGAYEF VVHEYISTVI DEDFIEKMKS LKKKLKKKQR IYDKDPSSSE 120 PLYQKSSEWL KMIWGYDVES ALEKPRKSKR IIKL |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 255708_at | 0.0 | ||||
Expression Atlas | AT4G00232 | - | ||||
AtGenExpress | AT4G00232 | - | ||||
ATTED-II | AT4G00232 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT4G00232.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT4G00232 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL161471 | 0.0 | AL161471.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | DQ446788 | 0.0 | DQ446788.1 Arabidopsis thaliana clone pENTR221-At4g00232 hypothetical protein (At4g00232) gene, complete cds. | |||
GenBank | F6N15 | 0.0 | AF069299.1 Arabidopsis thaliana BAC F6N15. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_567157.1 | 1e-107 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | Q3EAE7 | 1e-108 | STKLL_ARATH; Probable transcription factor At4g00232 | ||||
TrEMBL | A0A178UZT0 | 1e-105 | A0A178UZT0_ARATH; Uncharacterized protein | ||||
STRING | AT4G00232.1 | 1e-107 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16691 | 7 | 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT4G00232.1 |
Entrez Gene | 826492 |
iHOP | AT4G00232 |
wikigenes | AT4G00232 |
Publications ? help Back to Top | |||
---|---|---|---|
|