PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17825s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 538aa    MW: 60707.1 Da    PI: 5.2331
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17825s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.53.3e-10119153721374
                  GRAS  21 qalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege 109
                            ++L r++e +s+ g+p++R+  yf+eA++++ ++         +ps++s    ++ + ++k++++++P+ kf+hltaNqaIlea++++
  Araha.17825s0003.1.p 191 PETLIRIKESVSEFGNPIERVGYYFLEAMSHKETE---------SPSSSS---LEDFILSYKTLNDACPYSKFAHLTANQAILEATNQS 267
                           57899*************************99888.........555555...99********************************** PP

                  GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                           + +Hi+Df+i qG+QW aLlqaLa+R++g+p ++Ri g+ +p+ g     +l +tg+rL++fA+ l+++fef + + + ++ l+ +++r
  Araha.17825s0003.1.p 268 NNIHIVDFGIFQGIQWSALLQALATRSSGKPtRIRISGIPAPSLGdsPGPSLIATGNRLRDFAAILDLNFEFYP-ILTPIQLLNGSSFR 355
                           ***************************77776**********99988999************************.799*********** PP

                  GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                           v+p+E+l+Vn++l+l++llde++++     + L+l +sl+P++v++ e e+++n+  F+ r+ ++l++ysa+f+sle +l r+s+er  
  Araha.17825s0003.1.p 356 VDPDEVLVVNFMLELYKLLDETATTVG---TALRLARSLNPRIVTLGEYEVSLNRVGFAYRVKNSLRFYSAVFESLEPNLERDSKERLR 441
                           ***********************9999...*********************************************************** PP

                  GRAS 285 vErellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpL 367
                           vEr+l+gr+i ++v    ++    r+  +e++e+Wr  +e+aGF+pv+ s++a++qaklll +++ s  y++ e++  ++ l W++ pL
  Araha.17825s0003.1.p 442 VERVLFGRRILDLVRSDDNNkpgtRFGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNySTLYSLVESDPGFIsLAWNNVPL 530
                           **************97766544458999*************************************9999******999999******** PP

                  GRAS 368 vsvSaWr 374
                           ++vS+Wr
  Araha.17825s0003.1.p 531 LTVSSWR 537
                           ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.801146515IPR005202Transcription factor GRAS
PfamPF035141.1E-98191537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQLIK QKQQQQQSQH QQQEQEQEQE HNSWPNQSFG YTLTGSGFSD  60
PFQVTNDPGF HFPHLEHQNA VASEEFDSDE WMESLINGGD SLQTNPDFPI YGHDPFVSFP  120
SRLSAPSNLN RVNKYDSASH QLSQPPTSTT IWTPSPPSPQ HHPPPPQPDF DLNQPILKAI  180
HEYARKPETK PETLIRIKES VSEFGNPIER VGYYFLEAMS HKETESPSSS SLEDFILSYK  240
TLNDACPYSK FAHLTANQAI LEATNQSNNI HIVDFGIFQG IQWSALLQAL ATRSSGKPTR  300
IRISGIPAPS LGDSPGPSLI ATGNRLRDFA AILDLNFEFY PILTPIQLLN GSSFRVDPDE  360
VLVVNFMLEL YKLLDETATT VGTALRLARS LNPRIVTLGE YEVSLNRVGF AYRVKNSLRF  420
YSAVFESLEP NLERDSKERL RVERVLFGRR ILDLVRSDDN NKPGTRFGLM EEKEQWRVLM  480
EKAGFEPVKP SNYAVSQAKL LLWNYNYSTL YSLVESDPGF ISLAWNNVPL LTVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1311735371375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17825s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2292520.0AK229252.1 Arabidopsis thaliana mRNA for scarecrow-like 7, complete cds, clone: RAFL16-53-M18.
GenBankAL1329790.0AL132979.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881475.10.0scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLA0A384KPG40.0A0A384KPG4_ARATH; Uncharacterized protein
TrEMBLC0SVE00.0C0SVE0_ARATH; Uncharacterized protein At3g50650 (Fragment)
STRINGAT3G50650.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]