PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17718s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 467aa    MW: 51816.6 Da    PI: 10.5613
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17718s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141366148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                          ++ W+t E++ll++av+++G+++W+++a+++        ++t+ +c++++++++
  Araha.17718s0001.1.p 13 KQTWSTMEELLLACAVHRHGTDSWDSVASEIHkqnptvRTLTAIDCRHKYNDLK 66
                          789************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-7765IPR009057Homeodomain-like
PROSITE profilePS500906.969866IPR017877Myb-like domain
SMARTSM007171.5E-91268IPR001005SANT/Myb domain
PfamPF002496.6E-141366IPR001005SANT/Myb domain
SuperFamilySSF466895.23E-71382IPR009057Homeodomain-like
CDDcd001675.33E-71566No hitNo description
SMARTSM002970.0014130213IPR001487Bromodomain
SuperFamilySSF473705.23E-10152225IPR001487Bromodomain
PfamPF004397.9E-5152198IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.4E-9152231IPR001487Bromodomain
CDDcd043696.33E-10153208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAKPENDKNS PEKQTWSTME ELLLACAVHR HGTDSWDSVA SEIHKQNPTV RTLTAIDCRH  60
KYNDLKHRFS RNLVSPGSVD EETLAAEISS VPWLEELRKL RVDELRREVE RYDLSISSLQ  120
LKVKRLEDER EKSLKTENSD LDKIAETKEN HNFEMIRSRV EEGYYKTSRS NFFRDLLLLI  180
NNVRVFYGEQ SSEFNAAKQL FQLIKKQMSL KIPKQTLPTP KEESLVTSKE EVTVSSLKPT  240
LSVPIIACRK RSSLAGRSSA SVTEPLKKKN KVVPTVDEKP VSEDETSDKD VKPIVSKKMT  300
RGGAPSTAKK VGSRNVNTSL NAGISSKGRS SNDSSVPKKS VQEKKGNNTS GGSKKQSAAS  360
FLKRMKGVSS SETVVETVKA DSSNGKRGAE QRKNNSKNDQ VDAVKQPAGQ KRLTGKKPTI  420
EKGSPAKKDT GAASKRGTAP LMTKRDSETS EKETGSSTRP KKRSKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17718s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329770.0AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879681.10.0uncharacterized protein LOC9312517 isoform X1
TrEMBLD7LVY60.0D7LVY6_ARALL; Predicted protein
STRINGAl_scaffold_0005_27120.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-155DNA-binding bromodomain-containing protein