PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.16647s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 165aa MW: 18715.3 Da PI: 9.0163

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.16647s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.7	1e-43	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +Ca+Ck+lrrkC+kdCv+apyfpa++p kfa+vhk+FGasnv k+l++l+e++r+da++s+vyeA+ar++dPvyG+v++i++l++qle+ Araha.16647s0003.1.p 14 PCAGCKLLRRKCVKDCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVNSMVYEANARVQDPVYGCVRTISSLHRQLET 102 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l+++la +++e Araha.16647s0003.1.p 103 LQTQLAFAQAE 113 ****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.765	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-42	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MRQKGHRHGR TVSPCAGCKL LRRKCVKDCV FAPYFPAKEP YKFAIVHKIF GASNVNKMLQ 60 ELSENHRSDA VNSMVYEANA RVQDPVYGCV RTISSLHRQL ETLQTQLAFA QAELNHIRTL 120 HRIDTKPQPY TASTVTFPSN KDFYSDVDMA FVYEDGARDS LWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-42	13	114	10	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-42	13	114	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.16647s0003.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473842	0.0	AB473842.1 Arabidopsis thaliana ASL9 mRNA for ASYMMETRIC LEAVES2-like 9 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020869105.1	1e-118	LOB domain-containing protein 3
Refseq	XP_020869106.1	1e-118	LOB domain-containing protein 3
Refseq	XP_020869107.1	1e-118	LOB domain-containing protein 3
Refseq	XP_020869108.1	1e-118	LOB domain-containing protein 3
Refseq	XP_020869109.1	1e-118	LOB domain-containing protein 3
Refseq	XP_020869110.1	1e-118	LOB domain-containing protein 3
Refseq	XP_020869111.1	1e-118	LOB domain-containing protein 3
Refseq	XP_020869112.1	1e-118	LOB domain-containing protein 3
Refseq	XP_020869113.1	1e-118	LOB domain-containing protein 3
Refseq	XP_020869114.1	1e-118	LOB domain-containing protein 3
Swissprot	Q9SA51	1e-110	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	D7KEG5	1e-116	D7KEG5_ARALL; Predicted protein
STRING	Al_scaffold_0001_1711	1e-117	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	1e-113	ASYMMETRIC LEAVES 2-like 9

Link Out ? help Back to Top
Phytozome	Araha.16647s0003.1.p

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]