PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16261s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 296aa    MW: 33447.2 Da    PI: 5.3126
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16261s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1189e-37810530128
                   NAM  30 leevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkge 117
                           + e+i++++iy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++e++g+k+tLvf+ grapkge
  Araha.16261s0010.1.p   8 V-EIIPNAEIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS-GSEVIGTKRTLVFHIGRAPKGE 94 
                           4.78***************778888899**************************************.9********************* PP

                   NAM 118 ktdWvmheyrl 128
                           +tdW+mhey +
  Araha.16261s0010.1.p  95 RTDWIMHEYCM 105
                           *********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.1121122IPR003441NAC domain
SuperFamilySSF1019411.44E-403121IPR003441NAC domain
PfamPF023651.5E-1425104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDGLERSVEI IPNAEIYNFE PWDLPDKSIV KSDSEWFFFC ARGKKYPHGS QNRRATKMGY  60
WKATGKERDV KSGSEVIGTK RTLVFHIGRA PKGERTDWIM HEYCMKGVSL DDAMVVCRVR  120
RNKKYQSGMS QKAPEPKLVP EKRAIVQNGA TSSGSPSDLV DFYLAGESEE KLLSEMAESS  180
ENLQVHNDED FFADILRDEI INIDEAVMTG NTRNEIPTLE SASMEIRVLP LPNMIDKQMS  240
SLLEERPSQN KKGTDTMEPL SSCFVGIYSI KSVNRARWDV IICVVALIAM LFYLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-31312341166NO APICAL MERISTEM PROTEIN
1ut4_B6e-31312341166NO APICAL MERISTEM PROTEIN
1ut7_A6e-31312341166NO APICAL MERISTEM PROTEIN
1ut7_B6e-31312341166NO APICAL MERISTEM PROTEIN
3swm_A6e-31312344169NAC domain-containing protein 19
3swm_B6e-31312344169NAC domain-containing protein 19
3swm_C6e-31312344169NAC domain-containing protein 19
3swm_D6e-31312344169NAC domain-containing protein 19
3swp_A6e-31312344169NAC domain-containing protein 19
3swp_B6e-31312344169NAC domain-containing protein 19
3swp_C6e-31312344169NAC domain-containing protein 19
3swp_D6e-31312344169NAC domain-containing protein 19
4dul_A6e-31312341166NAC domain-containing protein 19
4dul_B6e-31312341166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16261s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3856850.0AF385685.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
GenBankAY0780060.0AY078006.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874059.10.0NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLD7M0V90.0D7M0V9_ARALL; Uncharacterized protein
STRINGscaffold_602275.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]