PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.1623s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 136aa MW: 15577.7 Da PI: 8.3995 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.4e-13 | 94 | 136 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++ E++l++d+ +++G+g+Wk+Iar+ k+R++ q+ s+ q Araha.1623s0004.1.p 94 AWSPNEHKLFLDGLNKYGKGDWKSIARECVKTRSPMQVASHAQ 136 6****************************************76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.3 | 3 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.56E-7 | 6 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.843 | 87 | 136 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-13 | 88 | 136 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-11 | 90 | 136 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 0.098 | 91 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.02E-9 | 94 | 136 | No hit | No description |
Pfam | PF00249 | 2.2E-10 | 94 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-9 | 94 | 134 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 136 aa Download sequence Send to blast |
MDEIPLWTRV DDKRFESALV QFPEGSPYFL ENIAQFLQKP LKDVKYYYQA LVDDVALIES 60 GNFALPNYRD DDYVSLKEAT KSKNQGTGKK KGIAWSPNEH KLFLDGLNKY GKGDWKSIAR 120 ECVKTRSPMQ VASHAQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00344 | DAP | Transfer from AT3G10580 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.1623s0004.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC011560 | 5e-80 | AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence. | |||
GenBank | ATAC013428 | 5e-80 | AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 5e-80 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884799.1 | 3e-96 | transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 5e-27 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | D7L911 | 8e-95 | D7L911_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_3000957 | 1e-95 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14731 | 7 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10580.2 | 1e-76 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.1623s0004.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|