PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.1612s0031.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 29268.4 Da PI: 7.1528 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.1 | 1.4e-12 | 12 | 71 | 30 | 88 |
..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 30 keesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++ ++++t+++ +sg+ W+++++ ++ s++++l++GWk+ vk+ +L e f+vF++d++ Araha.1612s0031.1.p 12 TPLPRKVTVKSvSSGNIWRMEMTTNGESDTVFLRDGWKKIVKDENLTEPTFLVFEFDDSC 71 55788999*999999*******99*******************************87633 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.392 | 1 | 81 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0096 | 2 | 81 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.57E-12 | 3 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.25E-8 | 7 | 78 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-10 | 11 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.5E-9 | 13 | 71 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.81E-6 | 162 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-4 | 165 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
NLPFVSDKIL GTPLPRKVTV KSVSSGNIWR MEMTTNGESD TVFLRDGWKK IVKDENLTEP 60 TFLVFEFDDS CVIHFCVYEH GSMCKRMRSP MGKEVIEVES DEENEEEDDD DVIVEDEDST 120 KGFYESPRRK DRGDTSRRCY LKTDSHKFDE YLDNKLSPSF PVDMTQRRTR IPAVLINDYS 180 LTFPNLVIVR DKIGKLKRRI SIWKNGSVCL NGIDSITRRN HVKRGDKMLF ELKTVHGYHG 240 LVREIKVHII KC* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.1612s0031.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881987.2 | 1e-151 | B3 domain-containing protein REM22 | ||||
Swissprot | Q9STF1 | 1e-124 | REM22_ARATH; B3 domain-containing protein REM22 | ||||
TrEMBL | D7LBT4 | 1e-125 | D7LBT4_ARALL; Uncharacterized protein | ||||
TrEMBL | D7LN48 | 1e-125 | D7LN48_ARALL; Transcriptional factor B3 family protein | ||||
STRING | fgenesh1_pm.C_scaffold_4002207 | 1e-126 | (Arabidopsis lyrata) | ||||
STRING | fgenesh1_pm.C_scaffold_5000849 | 1e-126 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16649 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46770.1 | 1e-115 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.1612s0031.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|