PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.16049s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 268aa MW: 28889 Da PI: 4.6827

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.16049s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	201	246	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq Araha.16049s0004.1.p 201 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKVLQ 246 689*******************7....688*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.557	195	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-16	198	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.55E-12	199	250	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.0E-16	200	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-12	201	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-10	201	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MQSTSVGSSG GGDDGGAGRG GGGGGGGGVS RSGLSRIRSA PATWLEALLE EDEEESLKPN 60 LGLTDLLTGN SNDLPTSRGS FEFPIPVEQG LYQQGGFHRQ NSTPADFLSG SDGFIQSFGI 120 PANYDYLSGN IDVSPGSKRS REMEALFSSP EFTSQMKGEQ SSGQVPAGVS GMTDMNMENL 180 MEDSVAFRVR AKRGCATHPR SIAERVRRTR ISDRIRKLQE LVPNMDKQTN TADMLEEAVE 240 YVKVLQRQIQ ELTEEQKRCT CIPKEEQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.16049s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK230384	0.0	AK230384.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL24-31-D13.
GenBank	BT010423	0.0	BT010423.1 Arabidopsis thaliana At4g09180 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002872439.1	1e-159	transcription factor bHLH81
Swissprot	Q9M0R0	1e-159	BH081_ARATH; Transcription factor bHLH81
TrEMBL	A0A1J3GEI9	1e-159	A0A1J3GEI9_NOCCA; Transcription factor bHLH81
STRING	fgenesh2_kg.6__2924__AT4G09180.1	1e-159	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5104	25	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09180.1	1e-150	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.16049s0004.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]