PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15719s0014.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 270aa    MW: 30613.8 Da    PI: 4.4887
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15719s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-2067120356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t+eq++ Le+ Fe ++++  +++++LAkklgL+ rqV vWFqNrRa++k
  Araha.15719s0014.1.p  67 KKRRLTTEQVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 120
                           56789************************************************9 PP
2HD-ZIP_I/II134.63.4e-4366158193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl++eqv+lLE+sFe+e+kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ k++++Lr+
  Araha.15719s0014.1.p  66 EKKRRLTTEQVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVKDNDKLRS 154
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elke 93 
                           e+++
  Araha.15719s0014.1.p 155 EVTS 158
                           9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.91E-2052124IPR009057Homeodomain-like
PROSITE profilePS5007117.81562122IPR001356Homeobox domain
SMARTSM003891.3E-1965126IPR001356Homeobox domain
CDDcd000861.91E-1867123No hitNo description
PfamPF000462.2E-1767120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-2268129IPR009057Homeodomain-like
PRINTSPR000313.9E-693102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000313.9E-6102118IPR000047Helix-turn-helix motif
PfamPF021833.1E-17122164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MESNSFFFGP SASHGNNMFF LGNLNPVVQG GARSMMNMEE TSKRRPFFSS PEDLYDDDYY  60
DDQLPEKKRR LTTEQVHLLE KSFETENKLE PDRKTQLAKK LGLQPRQVAV WFQNRRARWK  120
TKQLERDYDL LKSTYDQLLS NYDSIVKDND KLRSEVTSLT EKLQGKEETA NEPPGLVPEP  180
NQLDTVYINP AAIKTEDRLS SGSVGSAVLD EDAPQLLDSC DSYFPSIVPI QDTNASDNDN  240
DRSCFADVFV PTTSPSHDHG ESLAFWGWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15719s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0581880.0AY058188.1 Arabidopsis thaliana AT3g01470/F4P13_2 mRNA, complete cds.
GenBankAY0989720.0AY098972.1 Arabidopsis thaliana AT3g01470/F4P13_2 mRNA, complete cds.
GenBankX588210.0X58821.1 A.thaliana homeobox gene Athb-1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886095.10.0homeobox-leucine zipper protein HAT5
SwissprotQ022831e-179HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLD7L9P60.0D7L9P6_ARALL; Homeobox-leucine zipper protein hat5
STRINGfgenesh2_kg.3__78__AT3G01470.10.0(Arabidopsis lyrata)
STRINGBostr.1460s0066.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.10.0homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]