PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15627s0025.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 292aa    MW: 32010.3 Da    PI: 9.5292
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15627s0025.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-12556147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                          +++WT+eE+e l+ +v ++G+g Wk I r          R+  ++k++w+++
  Araha.15627s0025.2.p  5 KLKWTAEEEEALLAGVGKHGPGKWKNILRDPEfaeqlSSRSNIDLKDKWRNL 56
                          689**********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.158162IPR017930Myb domain
SuperFamilySSF466891.15E-15358IPR009057Homeodomain-like
SMARTSM007172.2E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-13556IPR009057Homeodomain-like
CDDcd116602.01E-20756No hitNo description
PfamPF139212.1E-8858No hitNo description
SuperFamilySSF467854.46E-16123201IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005266.0E-19124189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.3E-12124192IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.419126194IPR005818Linker histone H1/H5, domain H15
PfamPF005385.8E-10128187IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGV GKHGPGKWKN ILRDPEFAEQ LSSRSNIDLK DKWRNLSVAP  60
GIQGSKDKIR TPKIKAAAFH LASAAAAAIL TPPHSAHSSP VAVLPRSGSS DLSIDDSFNI  120
VVDPKNAPRY DGMIFEALSA LTDANGSDVS AIFSFIEQRH EVPPNFRRIL SSRLRRLAAQ  180
GKLEKTQNFY KMNDNSLVTR TTPVARPKES NTKARQQTNS QGPSISQQMV GEASITAAYK  240
LVEVENKLDV SKGASEEIYR LIKLAEVADD MLVIAREMHE ECSQGKIMYL N*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15627s0025.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1185330.0AK118533.1 Arabidopsis thaliana At1g17520 mRNA for putative myb-related DNA-binding protein, complete cds, clone: RAFL19-76-F04.
GenBankAY5195380.0AY519538.1 Arabidopsis thaliana MYB transcription factor (At1g17520) mRNA, complete cds.
GenBankBT0052900.0BT005290.1 Arabidopsis thaliana At1g17520 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868109.10.0telomere repeat-binding factor 4 isoform X4
SwissprotF4I7L11e-176TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLD7KFG40.0D7KFG4_ARALL; Uncharacterized protein
STRINGscaffold_101953.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-162MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]