PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15627s0025.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 351aa    MW: 38754.1 Da    PI: 10.2116
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15627s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.8e-1264115147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                           +++WT+eE+e l+ +v ++G+g Wk I r          R+  ++k++w+++
  Araha.15627s0025.1.p  64 KLKWTAEEEEALLAGVGKHGPGKWKNILRDPEfaeqlSSRSNIDLKDKWRNL 115
                           689**********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.66359121IPR017930Myb domain
SuperFamilySSF466891.79E-1562117IPR009057Homeodomain-like
SMARTSM007172.2E-763118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-1364115IPR009057Homeodomain-like
CDDcd116601.66E-1966115No hitNo description
PfamPF139212.8E-867117No hitNo description
SuperFamilySSF467855.99E-16182260IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-12183251IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005266.0E-19183248IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.419185253IPR005818Linker histone H1/H5, domain H15
PfamPF005387.8E-10187246IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MTMWSRIRKA KFLGSNSFWG TSPAEESAAR RSLSPIVIYT KTTKLNKVTE RRGENRSVEM  60
GNQKLKWTAE EEEALLAGVG KHGPGKWKNI LRDPEFAEQL SSRSNIDLKD KWRNLSVAPG  120
IQGSKDKIRT PKIKAAAFHL ASAAAAAILT PPHSAHSSPV AVLPRSGSSD LSIDDSFNIV  180
VDPKNAPRYD GMIFEALSAL TDANGSDVSA IFSFIEQRHE VPPNFRRILS SRLRRLAAQG  240
KLEKTQNFYK MNDNSLVTRT TPVARPKESN TKARQQTNSQ GPSISQQMVG EASITAAYKL  300
VEVENKLDVS KGASEEIYRL IKLAEVADDM LVIAREMHEE CSQGKIMYLN *
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15627s0025.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1185330.0AK118533.1 Arabidopsis thaliana At1g17520 mRNA for putative myb-related DNA-binding protein, complete cds, clone: RAFL19-76-F04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868109.10.0telomere repeat-binding factor 4 isoform X4
SwissprotF4I7L11e-175TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLD7KFG40.0D7KFG4_ARALL; Uncharacterized protein
STRINGscaffold_101953.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-161MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]