PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1545s0005.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24882.3 Da PI: 4.0703 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.5 | 1.6e-08 | 12 | 33 | 1 | 26 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng 26 ++y+GVr++ +g+WvAeIr+p g Araha.1545s0005.2.p 12 CDYRGVRQRT-WGKWVAEIREP---G 33 68*****999.*********98...4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-4 | 12 | 34 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.059 | 13 | 46 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0052 | 13 | 54 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-9 | 14 | 34 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-5 | 14 | 33 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MKGKGGPENG ICDYRGVRQR TWGKWVAEIR EPGRVCARED TNVRSGFAQV KLEDCNDEYV 60 LLDSSQCIKE ELKVKEEVME EHNSAVGFGI GQDPKREILD AWLMGNGNEQ EPLEFGVDET 120 FDINELLGIL DDNNVSGQET MQNQVDRLPN FSYQTQFQDA NLFGSLDPME IAHPGVDYGY 180 PYVQPSEMEN NGIDLDHRRF NDLDIQDLDF GGEKDVHGST * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1545s0005.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007020 | 0.0 | AC007020.5 Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete sequence. | |||
GenBank | AF085279 | 0.0 | AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence. | |||
GenBank | AY084695 | 0.0 | AY084695.1 Arabidopsis thaliana clone 115358 mRNA, complete sequence. | |||
GenBank | BT026505 | 0.0 | BT026505.1 Arabidopsis thaliana At2g40340 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020885570.1 | 1e-129 | dehydration-responsive element-binding protein 2C isoform X2 | ||||
Swissprot | Q8LFR2 | 1e-116 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | D7LF31 | 1e-127 | D7LF31_ARALL; Uncharacterized protein | ||||
STRING | scaffold_402826.1 | 1e-128 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 1e-109 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.1545s0005.2.p |
Publications ? help Back to Top | |||
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