PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1519s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 284aa    MW: 30912.8 Da    PI: 8.4833
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1519s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-18125179256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++tk+q  +Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Araha.1519s0001.1.p 125 RKKLRLTKQQSAVLEDSFKLHSTLNPKQKQNLARQLNLRPRQVEVWFQNRRARTK 179
                          788899***********************************************98 PP
2HD-ZIP_I/II123.21.3e-39125214191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+k+q+++LE+sF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +
  Araha.1519s0001.1.p 125 RKKLRLTKQQSAVLEDSFKLHSTLNPKQKQNLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-A 213
                          69*************************************************************************************9.4 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Araha.1519s0001.1.p 214 L 214
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17114175IPR009057Homeodomain-like
PROSITE profilePS5007117.184121181IPR001356Homeobox domain
SuperFamilySSF466892.57E-18123189IPR009057Homeodomain-like
SMARTSM003891.1E-15123185IPR001356Homeobox domain
PfamPF000467.2E-16125179IPR001356Homeobox domain
CDDcd000864.00E-16125182No hitNo description
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
SMARTSM003407.7E-26181224IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-9181215IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSATVDHRLI RLDPSLTLSL SGESYKTKTA  60
AGAGDQICRQ TSSHSGISSF SSGRVKRERE IYGGDGEEEA EETTERVVCS RVSDDHEDEE  120
GVSARKKLRL TKQQSAVLED SFKLHSTLNP KQKQNLARQL NLRPRQVEVW FQNRRARTKL  180
KQTEVDCEFL KKCCETLTDE NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG  240
GGGGAGGVGG GTAAVDGETA KGAFSIVTKP RFYNPFTNPS AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1519s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU093360.0U09336.1 Arabidopsis thaliana clone HAT22 homeobox protein mRNA, complete cds.
GenBankAY0875630.0AY087563.1 Arabidopsis thaliana clone 36691 mRNA, complete sequence.
GenBankBT0023180.0BT002318.1 Arabidopsis thaliana clone C105403 putative homeobox protein HAT22 (At4g37790) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874925.10.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-174HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLD7MA030.0D7MA03_ARALL; Homeobox-leucine zipper protein 22
STRINGfgenesh2_kg.7__270__AT4G37790.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-172HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]