PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.14511s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 30273.5 Da    PI: 9.0206
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.14511s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.2e-30959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krienk+nrqvtfskRr+g+lKKA+E+SvLCdaev++i+fs++gkl+ey s
  Araha.14511s0002.1.p  9 KRIENKINRQVTFSKRRAGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYTS 59
                          79***********************************************75 PP
2K-box1072.2e-358617610100
                 K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           + + + +++ e+++Lk++ie L+r+qRh+lGedLe++slk+Lq+LeqqLe++lk+iRs+Kn+l++e++++lq+keke+qeen +L+k++
  Araha.14511s0002.1.p  86 QINAQPNWSMEYSRLKAKIELLERNQRHYLGEDLEPMSLKDLQNLEQQLETALKHIRSRKNQLMYESLNNLQRKEKEIQEENSMLTKQI 174
                           4556779*********************************************************************************9 PP

                 K-box  99 ee 100
                           +e
  Araha.14511s0002.1.p 175 KE 176
                           87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.903161IPR002100Transcription factor, MADS-box
CDDcd002652.12E-40279No hitNo description
SuperFamilySSF554552.22E-33285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-3185174IPR002487Transcription factor, K-box
PROSITE profilePS5129717.4990180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYTSE  60
SCMEKVLERY ERYSYAERQL IAPDSQINAQ PNWSMEYSRL KAKIELLERN QRHYLGEDLE  120
PMSLKDLQNL EQQLETALKH IRSRKNQLMY ESLNNLQRKE KEIQEENSML TKQIKERENI  180
LRTQKTQCEQ LNRNHDVPPP QPQPFQHPHP YMISHQTSPF LNMGGMYQGE DQTAMRRNNL  240
DLTLEPIYNY LGCYAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-21174173MEF2 CHIMERA
6byy_B3e-21174173MEF2 CHIMERA
6byy_C3e-21174173MEF2 CHIMERA
6byy_D3e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.14511s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHDBD0.0L36925.1 Arabidopsis thaliana (clone pSK112) CAL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890666.10.0transcription factor CAULIFLOWER
SwissprotD7KQR80.0CAL_ARALL; Transcription factor CAULIFLOWER
TrEMBLA0A178W9U91e-172A0A178W9U9_ARATH; CAL1
STRINGscaffold_102909.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-165MIKC_MADS family protein
Publications ? help Back to Top
  1. Hu TT, et al.
    The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
    Nat. Genet., 2011. 43(5): p. 476-81
    [PMID:21478890]