PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1420s0013.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 356aa    MW: 39081.7 Da    PI: 4.7813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1420s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102853251055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Araha.1420s0013.1.p 285 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 325
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14277341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-12280334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.06E-12284329No hitNo description
PfamPF000101.4E-7285325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEAMGEWSTN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGATGGDHHQ GLYWNLGSHH  60
NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPAAEENQ NGTMDFGMED VTINTNSYLV  120
GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTDHHQKS LTGSKKRSRA  180
TSNDKNKRAR VNKRNQKNIE MSGDNNGGEE EEGEKLKKRK NGAMMSRQNS STTFCTEEES  240
NCADQDGGGE DSSSKEDDAS KALNLNGKTR ASRGAATDPQ SLYARKRRER INERLRILQN  300
LVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDDLWMYA PIAFNGMDIG LSSPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1420s0013.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886160.0AF488616.1 Arabidopsis thaliana clone bHLH085 putative bHLH transcription factor mRNA, complete cds.
GenBankAK2281100.0AK228110.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-58-P18.
GenBankBT0031370.0BT003137.1 Arabidopsis thaliana At4g33880 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875027.10.0transcription factor bHLH85
SwissprotQ84WK00.0BH085_ARATH; Transcription factor bHLH85
TrEMBLD7MGE40.0D7MGE4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__724__AT4G33880.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.10.0ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]