PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13956s0002.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 732aa    MW: 81836.1 Da    PI: 8.2932
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13956s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.2e-06257279425
                           ---SGGGGTS..--TTTTT-SS-S CS
               zf-CCCH   4 elCrffartG..tCkyGdrCkFaH 25 
                           ++Crffa  G  +C+ G++C+F+H
  Araha.13956s0002.2.p 257 VPCRFFAS-GsgYCRNGNNCRFSH 279
                           68**7777.559************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.896253283IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036254281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MSASGRKRVS KWDTKEEDTQ HVSGNDYTGK SGYKDPEHVR FYPDGNGRNG SRRSGPDDDD  60
EHLKSRQHSG EAWPPRSRVS HDDGDAMMGY YDPRKSSEQD ESRQQYVRQS PSRDRSRPRR  120
SGSRSNSRSR SRSQSPLQRV RRDGGGSYDK HKSRARVSPR SGREIDGRYN RAGDYDWEAK  180
NRKTRDTNYY TEDSREQQPV RVGGRTDYSS DFLEENHNSR RETLDPTIRS HRNEFARERE  240
TQRRDVLEGE FHRSSNVPCR FFASGSGYCR NGNNCRFSHH GAPSARGSPE RKPQNEIYSR  300
QDNNNHCGTT ERMRNSHRWN DIERSDAGKS SEVEISRVSK GMSEAKGNNS SWIDDMEMSP  360
DWNYGVKTLK KPVNEEHGGV SQSSQSRVLK DASPAYEHGA AAIAQQDGNR RNIGMFTTVS  420
EKTVASAHHN FSNNLANSAP PVQAFSQNIE NHSAVPYQST PLAVGGSQVL LPAAINLPGG  480
LNSSNLENGN AQNTVSREEL NHISNISASL AQFFGNGQPI PHLQSTLNPK QTMQVPEVYG  540
TKEQSQNDLP SNNSIHTGGV PVVTALPINN SDTEQLRIPE IVISLDGNPK ASSEENREKK  600
TDEEASKEPD GRKTEEEKDT AEDAENVVEE EEDDGALDED SKKEKDPKGM RAFKFALVEI  660
VKELLKPAWK EGGMNKDAYK NIVKKVVDKV TGAVQTGNIP QTQEKIDNYL SASKPKLTKL  720
VQAYVSKVKK S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13956s0002.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0844142e-34AC084414.2 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence.
GenBankCP0026842e-34CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891459.10.0zinc finger CCCH domain-containing protein 38
SwissprotQ9LIH51e-179C3H38_ARATH; Zinc finger CCCH domain-containing protein 38
TrEMBLD7KD690.0D7KD69_ARALL; Predicted protein
STRINGAl_scaffold_0001_41870.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-17C3H family protein